Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Gm42432-201ENSMUST00000197902 1617 ntBASIC13.34□□□□□ -0.27
Scn11aQ9R053 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Rrm2b-207ENSMUST00000146821 420 ntTSL 5 BASIC13.34□□□□□ -0.27
Scn11aQ9R053 C230062I16Rik-203ENSMUST00000208015 648 ntTSL 3 BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Gm8162-201ENSMUST00000213951 665 ntBASIC13.34□□□□□ -0.27
Scn11aQ9R053 Gm5449-201ENSMUST00000081132 357 ntBASIC13.34□□□□□ -0.27
Scn11aQ9R053 AC122860.2-201ENSMUST00000217967 2671 ntBASIC13.34□□□□□ -0.27
Scn11aQ9R053 Clu-201ENSMUST00000022616 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Scn11aQ9R053 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Scn11aQ9R053 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Scn11aQ9R053 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Scn11aQ9R053 Prg4-201ENSMUST00000006171 1869 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Scn11aQ9R053 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Gm23769-201ENSMUST00000104441 121 ntBASIC13.33□□□□□ -0.28
Scn11aQ9R053 Gm6758-201ENSMUST00000119643 1055 ntBASIC13.33□□□□□ -0.28
Scn11aQ9R053 Gm22344-201ENSMUST00000122642 278 ntBASIC13.33□□□□□ -0.28
Scn11aQ9R053 Gm15886-201ENSMUST00000123155 1250 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Olfr1358-201ENSMUST00000204477 1064 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Gm5650-201ENSMUST00000209641 598 ntBASIC13.33□□□□□ -0.28
Scn11aQ9R053 Pigx-212ENSMUST00000215073 765 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Olfr1121-201ENSMUST00000062555 945 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Izumo1r-202ENSMUST00000069408 1172 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 AC167565.1-201ENSMUST00000226980 1833 ntBASIC13.33□□□□□ -0.28
Scn11aQ9R053 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Hsd3b3-204ENSMUST00000107019 1533 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Scn11aQ9R053 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Gm13709-201ENSMUST00000138573 614 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Gm24294-201ENSMUST00000158295 277 ntBASIC13.32□□□□□ -0.28
Scn11aQ9R053 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Gm18042-201ENSMUST00000219887 790 ntBASIC13.32□□□□□ -0.28
Scn11aQ9R053 AC152169.1-201ENSMUST00000223901 701 ntBASIC13.32□□□□□ -0.28
Scn11aQ9R053 AC187103.3-201ENSMUST00000225725 646 ntBASIC13.32□□□□□ -0.28
Scn11aQ9R053 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC13.32□□□□□ -0.28
Scn11aQ9R053 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Gm44740-201ENSMUST00000205603 1614 ntBASIC13.32□□□□□ -0.28
Scn11aQ9R053 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Gm35363-201ENSMUST00000209330 1317 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Pmp22-201ENSMUST00000018361 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Scn11aQ9R053 Gm12470-201ENSMUST00000117239 1049 ntBASIC13.32□□□□□ -0.28
Scn11aQ9R053 Gm15031-201ENSMUST00000121341 210 ntBASIC13.32□□□□□ -0.28
Scn11aQ9R053 Gm12681-201ENSMUST00000132337 700 ntTSL 3 BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms