Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm42602-201ENSMUST00000200288 3224 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm44573-201ENSMUST00000191753 2370 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Ces3b-202ENSMUST00000093221 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Igtp-203ENSMUST00000168280 1832 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Atp1a2-202ENSMUST00000097464 3186 ntTSL 5 BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm13665-201ENSMUST00000120830 528 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm17376-201ENSMUST00000166016 84 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm25890-201ENSMUST00000177643 165 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm25700-201ENSMUST00000177693 110 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm22614-201ENSMUST00000178300 165 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Uba52-ps-201ENSMUST00000183770 379 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm43962-201ENSMUST00000203898 190 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm45224-201ENSMUST00000208203 414 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Olfr1347-205ENSMUST00000220413 964 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm22042-201ENSMUST00000082989 165 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Gm26110-201ENSMUST00000083971 165 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Rab3c-202ENSMUST00000223922 2398 ntBASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Lima1Q9ERG0 AC167565.1-201ENSMUST00000226980 1833 ntBASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Glb1l2-207ENSMUST00000162702 2555 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Dyrk4-202ENSMUST00000078521 2252 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Ccdc93-202ENSMUST00000112621 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 AC122273.1-201ENSMUST00000213634 2327 ntBASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gal3st4-201ENSMUST00000100530 3162 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Ccdc24-206ENSMUST00000164853 3990 ntTSL 2 BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gm8956-201ENSMUST00000203939 825 ntBASIC11.25□□□□□ -0.61
Lima1Q9ERG0 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 AC159205.5-202ENSMUST00000224849 386 ntBASIC11.25□□□□□ -0.61
Lima1Q9ERG0 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gm5703-201ENSMUST00000186658 3973 ntBASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gm10152-201ENSMUST00000193475 1344 ntBASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gm10436-202ENSMUST00000220521 1788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Lima1Q9ERG0 Zfp454-201ENSMUST00000050595 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gm37368-201ENSMUST00000193173 3212 ntBASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lima1Q9ERG0 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 80.9 ms