Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Gm22920-201ENSMUST00000102175 109 ntBASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Tcf7l2-206ENSMUST00000111652 1041 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Gm22711-201ENSMUST00000116890 133 ntBASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Gm4959-201ENSMUST00000197271 1044 ntBASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Gm45856-201ENSMUST00000212752 416 ntBASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Atp6v1a-201ENSMUST00000063661 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 CT009489.1-201ENSMUST00000227740 1893 ntBASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Gm43963-201ENSMUST00000203466 2488 ntBASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 2810006K23Rik-201ENSMUST00000077376 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Gm12463-201ENSMUST00000118271 849 ntBASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Gm5342-201ENSMUST00000181982 1003 ntBASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Gm7504-201ENSMUST00000201449 424 ntBASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Gm5996-201ENSMUST00000211110 718 ntBASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 AC159747.1-201ENSMUST00000219903 265 ntBASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 AC160929.1-201ENSMUST00000221247 415 ntBASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Ginm1-202ENSMUST00000065124 300 ntBASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Gm28424-201ENSMUST00000187393 1319 ntBASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx56Q9D0R4 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Gm44663-201ENSMUST00000206898 3150 ntBASIC12□□□□□ -0.49
Ddx56Q9D0R4 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx56Q9D0R4 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms