Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Col6a1Q04857 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Col6a1Q04857 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.66□□□□□ -0.38
Col6a1Q04857 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm11634-201ENSMUST00000154147 755 ntAPPRIS ALT2 TSL 3 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm11942-201ENSMUST00000180255 345 ntBASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm43969-201ENSMUST00000204833 535 ntBASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm45542-201ENSMUST00000210456 438 ntTSL 2 BASIC12.65□□□□□ -0.38
Col6a1Q04857 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC12.65□□□□□ -0.38
Col6a1Q04857 CT573047.1-201ENSMUST00000223652 851 ntBASIC12.65□□□□□ -0.38
Col6a1Q04857 AC138716.2-201ENSMUST00000226670 1016 ntBASIC12.65□□□□□ -0.38
Col6a1Q04857 Triap1-201ENSMUST00000031508 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Taar7f-201ENSMUST00000071691 1077 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Taar7d-201ENSMUST00000092657 1077 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Oprm1-211ENSMUST00000105602 1366 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC12.65□□□□□ -0.38
Col6a1Q04857 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col6a1Q04857 Gm38344-201ENSMUST00000195306 1353 ntBASIC12.65□□□□□ -0.38
Col6a1Q04857 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Col6a1Q04857 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.39
Col6a1Q04857 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Col6a1Q04857 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Col6a1Q04857 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Col6a1Q04857 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Gm14234-201ENSMUST00000119539 845 ntBASIC12.64□□□□□ -0.39
Col6a1Q04857 Gm14395-201ENSMUST00000120494 563 ntBASIC12.64□□□□□ -0.39
Col6a1Q04857 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Gm11205-201ENSMUST00000137738 431 ntTSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Gm8197-202ENSMUST00000193422 934 ntBASIC12.64□□□□□ -0.39
Col6a1Q04857 Gm17931-201ENSMUST00000208132 634 ntBASIC12.64□□□□□ -0.39
Col6a1Q04857 Gm20735-202ENSMUST00000212387 519 ntTSL 2 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC12.64□□□□□ -0.39
Col6a1Q04857 CT009738.1-201ENSMUST00000219031 809 ntBASIC12.64□□□□□ -0.39
Col6a1Q04857 Atp5j2-201ENSMUST00000037056 540 ntTSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.64□□□□□ -0.39
Col6a1Q04857 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.64□□□□□ -0.39
Col6a1Q04857 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Col6a1Q04857 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col6a1Q04857 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 76.4 ms