Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Tbc1d24-211ENSMUST00000201583 893 ntTSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
Cux1P53564 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cux1P53564 Mtch2-202ENSMUST00000111467 2281 ntTSL 5 BASIC17.3■□□□□ 0.36
Cux1P53564 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Cux1P53564 Gm19027-201ENSMUST00000187291 1355 ntBASIC17.3■□□□□ 0.36
Cux1P53564 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cux1P53564 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Cux1P53564 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Cux1P53564 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cux1P53564 Micu1-212ENSMUST00000179709 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cux1P53564 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cux1P53564 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC17.3■□□□□ 0.36
Cux1P53564 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Cux1P53564 Ncbp2-202ENSMUST00000115178 515 ntTSL 5 BASIC17.3■□□□□ 0.36
Cux1P53564 Gm11919-201ENSMUST00000117609 721 ntBASIC17.3■□□□□ 0.36
Cux1P53564 Gm8659-201ENSMUST00000120024 1084 ntBASIC17.3■□□□□ 0.36
Cux1P53564 AC105408.1-201ENSMUST00000227771 802 ntBASIC17.3■□□□□ 0.36
Cux1P53564 AC164099.1-201ENSMUST00000227780 333 ntBASIC17.3■□□□□ 0.36
Cux1P53564 Ggta1-201ENSMUST00000044255 1221 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Cux1P53564 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC17.3■□□□□ 0.36
Cux1P53564 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cux1P53564 Zw10-201ENSMUST00000034803 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cux1P53564 Reps1-210ENSMUST00000164556 2537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cux1P53564 AC109214.1-201ENSMUST00000219520 1372 ntBASIC17.3■□□□□ 0.36
Cux1P53564 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cux1P53564 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cux1P53564 CT010480.4-201ENSMUST00000224654 2283 ntBASIC17.29■□□□□ 0.36
Cux1P53564 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Cux1P53564 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC17.29■□□□□ 0.36
Cux1P53564 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Ptgds-203ENSMUST00000114259 775 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Cux1P53564 7330404K18Rik-201ENSMUST00000125558 487 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Gm15498-201ENSMUST00000126693 723 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC17.29■□□□□ 0.36
Cux1P53564 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Wbp1-209ENSMUST00000205023 716 ntBASIC17.29■□□□□ 0.36
Cux1P53564 Chac2-201ENSMUST00000020553 1018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Gpx4-ps2-201ENSMUST00000214811 555 ntBASIC17.29■□□□□ 0.36
Cux1P53564 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Cyp2d41-ps-201ENSMUST00000180453 1503 ntBASIC17.29■□□□□ 0.36
Cux1P53564 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cux1P53564 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Cux1P53564 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Cux1P53564 Clu-201ENSMUST00000022616 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Nek3-204ENSMUST00000178324 1989 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC17.28■□□□□ 0.36
Cux1P53564 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Cux1P53564 Ccl19-ps1-201ENSMUST00000119621 327 ntBASIC17.28■□□□□ 0.36
Cux1P53564 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC17.28■□□□□ 0.36
Cux1P53564 Gm7445-201ENSMUST00000192115 340 ntBASIC17.28■□□□□ 0.36
Cux1P53564 Rpl13-ps4-201ENSMUST00000194776 628 ntBASIC17.28■□□□□ 0.36
Cux1P53564 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Ghrl-205ENSMUST00000204163 447 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Gm44640-201ENSMUST00000206894 247 ntBASIC17.28■□□□□ 0.36
Cux1P53564 Gm7183-201ENSMUST00000213870 1005 ntBASIC17.28■□□□□ 0.36
Cux1P53564 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Cux1P53564 Taar5-201ENSMUST00000092659 1014 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Cux1P53564 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Cux1P53564 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Cux1P53564 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Cux1P53564 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Cux1P53564 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Cux1P53564 Pigb-202ENSMUST00000098566 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Cux1P53564 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Cux1P53564 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Trbv31-201ENSMUST00000103300 334 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 111.2 ms