Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Shmt1P50431 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Shmt1P50431 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.06□□□□□ -0.48
Shmt1P50431 Zfp612-201ENSMUST00000058804 3180 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Shmt1P50431 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC12.06□□□□□ -0.48
Shmt1P50431 Tcf7l2-206ENSMUST00000111652 1041 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Gm12218-201ENSMUST00000117666 399 ntBASIC12.06□□□□□ -0.48
Shmt1P50431 Gm12516-201ENSMUST00000120819 385 ntBASIC12.06□□□□□ -0.48
Shmt1P50431 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Gm29067-201ENSMUST00000190821 470 ntBASIC12.06□□□□□ -0.48
Shmt1P50431 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Shmt1P50431 Gm38210-201ENSMUST00000191944 809 ntBASIC12.06□□□□□ -0.48
Shmt1P50431 Gm43058-201ENSMUST00000197645 625 ntBASIC12.06□□□□□ -0.48
Shmt1P50431 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC12.06□□□□□ -0.48
Shmt1P50431 Gm2875-201ENSMUST00000211333 360 ntBASIC12.06□□□□□ -0.48
Shmt1P50431 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC12.06□□□□□ -0.48
Shmt1P50431 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC12.06□□□□□ -0.48
Shmt1P50431 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Mirlet7i-201ENSMUST00000083472 85 ntBASIC12.06□□□□□ -0.48
Shmt1P50431 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Shmt1P50431 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.06□□□□□ -0.48
Shmt1P50431 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC12.06□□□□□ -0.48
Shmt1P50431 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Shmt1P50431 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Shmt1P50431 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC12.05□□□□□ -0.48
Shmt1P50431 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Btrc-209ENSMUST00000224478 2194 ntBASIC12.05□□□□□ -0.48
Shmt1P50431 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Shmt1P50431 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Shmt1P50431 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Shmt1P50431 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Gm15617-201ENSMUST00000118973 771 ntBASIC12.05□□□□□ -0.48
Shmt1P50431 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC12.05□□□□□ -0.48
Shmt1P50431 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
Shmt1P50431 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC12.05□□□□□ -0.48
Shmt1P50431 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC12.05□□□□□ -0.48
Shmt1P50431 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Shmt1P50431 Fkbp15-203ENSMUST00000098033 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 AC154537.1-201ENSMUST00000226101 1304 ntBASIC12.05□□□□□ -0.48
Shmt1P50431 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Shmt1P50431 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Gm45416-201ENSMUST00000209713 2201 ntBASIC12.05□□□□□ -0.48
Shmt1P50431 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Shmt1P50431 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Shmt1P50431 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Shmt1P50431 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Shmt1P50431 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Shmt1P50431 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Shmt1P50431 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Shmt1P50431 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Shmt1P50431 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Shmt1P50431 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Shmt1P50431 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Shmt1P50431 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC12.04□□□□□ -0.48
Shmt1P50431 Gm11628-201ENSMUST00000117568 171 ntBASIC12.04□□□□□ -0.48
Shmt1P50431 Gm13422-201ENSMUST00000118834 504 ntBASIC12.04□□□□□ -0.48
Shmt1P50431 Gm13937-201ENSMUST00000121000 988 ntBASIC12.04□□□□□ -0.48
Shmt1P50431 Gm16397-201ENSMUST00000122201 494 ntBASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms