Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm22323-201ENSMUST00000103832 109 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm12857-201ENSMUST00000117678 592 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm7150-201ENSMUST00000122032 981 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Cd63-ps-202ENSMUST00000154992 717 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm3332-201ENSMUST00000189337 928 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm28071-201ENSMUST00000190355 478 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm5852-201ENSMUST00000194119 1021 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm3961-201ENSMUST00000204425 994 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm7183-201ENSMUST00000213870 1005 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm7293-201ENSMUST00000216682 1007 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm6653-201ENSMUST00000218063 1288 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 CT485787.1-201ENSMUST00000225617 968 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Dnali1-201ENSMUST00000036383 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm38376-201ENSMUST00000195493 2253 ntBASIC11.01□□□□□ -0.65
Tnfsf4P43488 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Tnfsf4P43488 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC11□□□□□ -0.65
Tnfsf4P43488 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Tnfsf4P43488 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Gm37600-201ENSMUST00000193764 3292 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 AC125409.1-201ENSMUST00000223213 3370 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
Tnfsf4P43488 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC11□□□□□ -0.65
Tnfsf4P43488 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 Gm11663-201ENSMUST00000117888 290 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 Gm12129-201ENSMUST00000120104 1147 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC11□□□□□ -0.65
Tnfsf4P43488 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC11□□□□□ -0.65
Tnfsf4P43488 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
Tnfsf4P43488 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC11□□□□□ -0.65
Tnfsf4P43488 Gm37666-201ENSMUST00000194110 866 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 Gm43822-201ENSMUST00000200285 476 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC11□□□□□ -0.65
Tnfsf4P43488 Gm4978-201ENSMUST00000071565 801 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Gm9129-201ENSMUST00000218173 1689 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 Gm11661-201ENSMUST00000121761 1327 ntBASIC11□□□□□ -0.65
Tnfsf4P43488 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC11□□□□□ -0.65
Tnfsf4P43488 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Tnfsf4P43488 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC10.99□□□□□ -0.65
Tnfsf4P43488 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Gm17244-201ENSMUST00000192482 3416 ntBASIC10.99□□□□□ -0.65
Tnfsf4P43488 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Tnfsf4P43488 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Tnfsf4P43488 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms