Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC13.26□□□□□ -0.29
Traf1P39428 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC13.26□□□□□ -0.29
Traf1P39428 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC13.26□□□□□ -0.29
Traf1P39428 Gm26631-201ENSMUST00000181462 2505 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC13.25□□□□□ -0.29
Traf1P39428 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC13.25□□□□□ -0.29
Traf1P39428 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Gm14892-201ENSMUST00000117636 267 ntBASIC13.25□□□□□ -0.29
Traf1P39428 Gm15782-201ENSMUST00000121073 445 ntBASIC13.25□□□□□ -0.29
Traf1P39428 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC13.25□□□□□ -0.29
Traf1P39428 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC13.25□□□□□ -0.29
Traf1P39428 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Gm38210-201ENSMUST00000191944 809 ntBASIC13.25□□□□□ -0.29
Traf1P39428 Gm37284-201ENSMUST00000193607 539 ntBASIC13.25□□□□□ -0.29
Traf1P39428 Gm42657-201ENSMUST00000201746 211 ntBASIC13.25□□□□□ -0.29
Traf1P39428 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Gm19009-201ENSMUST00000223072 823 ntBASIC13.25□□□□□ -0.29
Traf1P39428 AC132901.1-201ENSMUST00000224345 508 ntBASIC13.25□□□□□ -0.29
Traf1P39428 CT009536.2-201ENSMUST00000225370 665 ntBASIC13.25□□□□□ -0.29
Traf1P39428 AC136376.2-201ENSMUST00000228819 490 ntBASIC13.25□□□□□ -0.29
Traf1P39428 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Plekha6-204ENSMUST00000187285 5040 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 AC107453.4-201ENSMUST00000227068 1817 ntBASIC13.25□□□□□ -0.29
Traf1P39428 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Traf1P39428 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Traf1P39428 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Traf1P39428 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC13.24□□□□□ -0.29
Traf1P39428 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC13.24□□□□□ -0.29
Traf1P39428 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Traf1P39428 Mir1956-201ENSMUST00000157748 65 ntBASIC13.24□□□□□ -0.29
Traf1P39428 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC13.24□□□□□ -0.29
Traf1P39428 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC13.24□□□□□ -0.29
Traf1P39428 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC13.24□□□□□ -0.29
Traf1P39428 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC13.24□□□□□ -0.29
Traf1P39428 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Traf1P39428 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC13.24□□□□□ -0.29
Traf1P39428 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Traf1P39428 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Traf1P39428 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Traf1P39428 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC13.23□□□□□ -0.29
Traf1P39428 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Traf1P39428 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms