Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Mkx-201ENSMUST00000079788 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Eps8l1-204ENSMUST00000163893 3868 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Dld-201ENSMUST00000110857 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Lima1Q9ERG0 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm43908-201ENSMUST00000205074 1472 ntBASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Arpc3-202ENSMUST00000102525 899 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm13296-201ENSMUST00000117854 997 ntBASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm44967-201ENSMUST00000207047 631 ntBASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 AC153954.1-201ENSMUST00000216959 255 ntBASIC11.28□□□□□ -0.6
Lima1Q9ERG0 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm10699-201ENSMUST00000098916 2130 ntBASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm26642-201ENSMUST00000180981 2782 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Gm37031-201ENSMUST00000195487 2530 ntBASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC11.28□□□□□ -0.6
Lima1Q9ERG0 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Krba1-201ENSMUST00000031815 3685 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Lima1Q9ERG0 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Arhgef2-231ENSMUST00000177498 3966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Eif4g2-206ENSMUST00000161051 3548 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Gm4760-201ENSMUST00000119663 1030 ntBASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Gm25668-201ENSMUST00000157700 129 ntBASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Gm8856-201ENSMUST00000185254 1144 ntBASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Aprt-ps-201ENSMUST00000212311 505 ntBASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Gm7172-201ENSMUST00000218047 1152 ntBASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Rhoj-203ENSMUST00000118966 4892 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 AC169511.2-201ENSMUST00000226674 2063 ntBASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Spata5-201ENSMUST00000029277 2890 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 AC123619.2-202ENSMUST00000225097 1568 ntBASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Raver1-201ENSMUST00000115487 3470 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lima1Q9ERG0 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 66.6 ms