Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Casc1-208ENSMUST00000204105 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Gm6903-201ENSMUST00000160509 1366 ntBASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Gm45416-201ENSMUST00000209713 2201 ntBASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Ddx56Q9D0R4 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm44506-201ENSMUST00000206278 965 ntBASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm8342-201ENSMUST00000209839 757 ntBASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm6722-201ENSMUST00000221586 390 ntBASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Sparcl1-201ENSMUST00000031249 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ddx56Q9D0R4 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Tceal8-204ENSMUST00000163584 2358 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Gm37835-201ENSMUST00000193305 361 ntBASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 AC122891.1-201ENSMUST00000218671 268 ntBASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ddx56Q9D0R4 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ddx56Q9D0R4 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ddx56Q9D0R4 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Ddx56Q9D0R4 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ddx56Q9D0R4 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ddx56Q9D0R4 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Ddx56Q9D0R4 Gm10686-201ENSMUST00000215389 3247 ntBASIC12.02□□□□□ -0.48
Ddx56Q9D0R4 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ddx56Q9D0R4 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ddx56Q9D0R4 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx56Q9D0R4 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms