Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Gm5171-201ENSMUST00000214944 1415 ntBASIC12.11□□□□□ -0.47
Clp1Q99LI9 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Clp1Q99LI9 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Gm43242-201ENSMUST00000199507 1776 ntBASIC12.1□□□□□ -0.47
Clp1Q99LI9 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Lemd1-201ENSMUST00000112357 964 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Snord23-201ENSMUST00000116828 109 ntBASIC12.1□□□□□ -0.47
Clp1Q99LI9 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Gm12681-201ENSMUST00000132337 700 ntTSL 3 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 2410002F23Rik-220ENSMUST00000191537 872 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Gm45094-201ENSMUST00000207013 617 ntBASIC12.1□□□□□ -0.47
Clp1Q99LI9 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Gm14005-208ENSMUST00000223654 681 ntBASIC12.1□□□□□ -0.47
Clp1Q99LI9 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Gm18829-201ENSMUST00000188150 1622 ntBASIC12.1□□□□□ -0.47
Clp1Q99LI9 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Gm14005-210ENSMUST00000225087 1413 ntBASIC12.1□□□□□ -0.47
Clp1Q99LI9 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Gm28424-201ENSMUST00000187393 1319 ntBASIC12.1□□□□□ -0.47
Clp1Q99LI9 Samd4b-201ENSMUST00000040531 4349 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Clp1Q99LI9 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Nudt13-207ENSMUST00000224311 1574 ntBASIC12.09□□□□□ -0.47
Clp1Q99LI9 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Fbp2-201ENSMUST00000021907 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Gm5529-201ENSMUST00000165691 891 ntBASIC12.09□□□□□ -0.47
Clp1Q99LI9 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Gm43969-201ENSMUST00000204833 535 ntBASIC12.09□□□□□ -0.47
Clp1Q99LI9 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC12.09□□□□□ -0.47
Clp1Q99LI9 Mir670hg-205ENSMUST00000210851 1148 ntTSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Gm46224-201ENSMUST00000220221 1242 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 AC102847.1-202ENSMUST00000226313 1245 ntBASIC12.09□□□□□ -0.47
Clp1Q99LI9 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Gm44863-201ENSMUST00000207613 1422 ntBASIC12.09□□□□□ -0.47
Clp1Q99LI9 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.09□□□□□ -0.47
Clp1Q99LI9 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms