Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Gm9129-201ENSMUST00000218173 1689 ntBASIC11.82□□□□□ -0.52
Trim60Q8VI40 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Gm12857-201ENSMUST00000117678 592 ntBASIC11.82□□□□□ -0.52
Trim60Q8VI40 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Gm10807-201ENSMUST00000177134 795 ntBASIC11.82□□□□□ -0.52
Trim60Q8VI40 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Ccnt2-201ENSMUST00000027587 6738 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Ank1-204ENSMUST00000117270 5652 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Sez6l-205ENSMUST00000212480 5857 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Gm44573-201ENSMUST00000191753 2370 ntBASIC11.82□□□□□ -0.52
Trim60Q8VI40 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Gm13135-201ENSMUST00000117628 3121 ntBASIC11.82□□□□□ -0.52
Trim60Q8VI40 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Zmynd8-205ENSMUST00000109266 5072 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim60Q8VI40 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Ankrd11-202ENSMUST00000098334 8455 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Tnfsf13b-203ENSMUST00000207792 4771 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm38292-201ENSMUST00000192646 3045 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm14723-201ENSMUST00000118686 215 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Mir8109-201ENSMUST00000184375 117 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Ighv5-7-201ENSMUST00000192302 244 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm44967-201ENSMUST00000207047 631 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm45113-201ENSMUST00000207518 165 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm7183-201ENSMUST00000213870 1005 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 AC102569.1-201ENSMUST00000221563 685 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm14137-201ENSMUST00000069711 3067 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Trim60Q8VI40 Gm45206-201ENSMUST00000206885 2285 ntBASIC11.81□□□□□ -0.52
Trim60Q8VI40 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms