Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm37827-201ENSMUST00000194486 1542 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Ccdc129-201ENSMUST00000044729 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Ccdc24-206ENSMUST00000164853 3990 ntTSL 2 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Ces3b-202ENSMUST00000093221 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Tmem231-201ENSMUST00000034429 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm13678-201ENSMUST00000118926 340 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Mup-ps15-201ENSMUST00000121741 539 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm16234-201ENSMUST00000124976 815 ntTSL 5 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm24694-201ENSMUST00000180054 110 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm27838-201ENSMUST00000184829 128 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm27663-201ENSMUST00000184839 110 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm37337-201ENSMUST00000192601 993 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm37922-201ENSMUST00000195596 455 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 AC140375.2-201ENSMUST00000225283 584 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 AC115784.1-201ENSMUST00000227687 1010 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Cdk5rap1-201ENSMUST00000028990 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm10686-201ENSMUST00000215389 3247 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Gm10699-201ENSMUST00000098916 2130 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 1810053B23Rik-205ENSMUST00000188056 1592 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Hepacam-201ENSMUST00000051839 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Sh2d3c-202ENSMUST00000113242 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC12.17□□□□□ -0.46
Rnf40Q3U319 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Sorbs3-203ENSMUST00000227653 3061 ntAPPRIS ALT2 BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Kcnab2-207ENSMUST00000160884 3922 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Atp6v1c2-202ENSMUST00000095820 1549 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 CT030185.2-201ENSMUST00000222614 1310 ntBASIC12.16□□□□□ -0.46
Rnf40Q3U319 AC154537.1-201ENSMUST00000226101 1304 ntBASIC12.16□□□□□ -0.46
Rnf40Q3U319 Rasgrp4-212ENSMUST00000204194 2993 ntTSL 5 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Slc18a1-201ENSMUST00000037478 3115 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 AC129336.2-201ENSMUST00000218053 3086 ntBASIC12.16□□□□□ -0.46
Rnf40Q3U319 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Gm23912-201ENSMUST00000104687 87 ntBASIC12.16□□□□□ -0.46
Rnf40Q3U319 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Gm12314-201ENSMUST00000118104 538 ntBASIC12.16□□□□□ -0.46
Rnf40Q3U319 Gm11700-201ENSMUST00000119409 403 ntBASIC12.16□□□□□ -0.46
Rnf40Q3U319 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Gm8018-201ENSMUST00000173536 789 ntBASIC12.16□□□□□ -0.46
Rnf40Q3U319 Tceanc-203ENSMUST00000180322 1080 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Gm45195-201ENSMUST00000205597 1008 ntBASIC12.16□□□□□ -0.46
Rnf40Q3U319 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Olfr1122-201ENSMUST00000056435 1080 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Olfr812-201ENSMUST00000057775 1043 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Gm10684-201ENSMUST00000098827 2203 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Gm37131-201ENSMUST00000192502 1561 ntBASIC12.16□□□□□ -0.46
Rnf40Q3U319 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Sla2-202ENSMUST00000109561 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Olfr1032-203ENSMUST00000111589 1393 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rnf40Q3U319 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 62.1 ms