Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Col6a1Q04857 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Col6a1Q04857 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Col6a1Q04857 Gm6754-201ENSMUST00000117124 913 ntBASIC12.68□□□□□ -0.38
Col6a1Q04857 Gm11996-201ENSMUST00000117538 915 ntBASIC12.68□□□□□ -0.38
Col6a1Q04857 Gm12663-201ENSMUST00000118481 958 ntBASIC12.68□□□□□ -0.38
Col6a1Q04857 Nnmt-202ENSMUST00000119426 912 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Col6a1Q04857 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC12.68□□□□□ -0.38
Col6a1Q04857 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC12.68□□□□□ -0.38
Col6a1Q04857 Gm19046-201ENSMUST00000221263 1298 ntBASIC12.68□□□□□ -0.38
Col6a1Q04857 AC124752.1-201ENSMUST00000222131 776 ntTSL 5 BASIC12.68□□□□□ -0.38
Col6a1Q04857 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Col6a1Q04857 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
Col6a1Q04857 AC158636.1-201ENSMUST00000220118 1393 ntBASIC12.68□□□□□ -0.38
Col6a1Q04857 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Col6a1Q04857 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.67□□□□□ -0.38
Col6a1Q04857 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Col6a1Q04857 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Col6a1Q04857 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm12179-201ENSMUST00000118344 1272 ntBASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm14055-201ENSMUST00000130262 668 ntTSL 5 BASIC12.67□□□□□ -0.38
Col6a1Q04857 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm23675-201ENSMUST00000157311 125 ntBASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm25226-201ENSMUST00000158198 123 ntBASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm42430-201ENSMUST00000197209 616 ntBASIC12.67□□□□□ -0.38
Col6a1Q04857 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Col6a1Q04857 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC12.67□□□□□ -0.38
Col6a1Q04857 AC142266.1-201ENSMUST00000228107 415 ntBASIC12.67□□□□□ -0.38
Col6a1Q04857 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm5513-201ENSMUST00000072982 1218 ntBASIC12.67□□□□□ -0.38
Col6a1Q04857 Rpl3-201ENSMUST00000081650 1293 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC12.67□□□□□ -0.38
Col6a1Q04857 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Col6a1Q04857 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Col6a1Q04857 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC12.66□□□□□ -0.38
Col6a1Q04857 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC12.66□□□□□ -0.38
Col6a1Q04857 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Lonp2-207ENSMUST00000163987 1556 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Gm9166-201ENSMUST00000120293 561 ntBASIC12.66□□□□□ -0.38
Col6a1Q04857 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC12.66□□□□□ -0.38
Col6a1Q04857 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Gm19015-201ENSMUST00000184002 1189 ntBASIC12.66□□□□□ -0.38
Col6a1Q04857 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Gm35960-201ENSMUST00000202712 767 ntBASIC12.66□□□□□ -0.38
Col6a1Q04857 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC12.66□□□□□ -0.38
Col6a1Q04857 CT010506.1-201ENSMUST00000223673 349 ntBASIC12.66□□□□□ -0.38
Col6a1Q04857 AC118639.2-201ENSMUST00000226289 223 ntBASIC12.66□□□□□ -0.38
Col6a1Q04857 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Col6a1Q04857 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Col6a1Q04857 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 AC160405.1-201ENSMUST00000218207 1545 ntBASIC12.66□□□□□ -0.38
Col6a1Q04857 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Col6a1Q04857 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms