Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC13.63□□□□□ -0.23
Rfx1P48377 Llgl1-202ENSMUST00000108719 4268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Ebf3-202ENSMUST00000106118 3736 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
Rfx1P48377 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Gm8862-201ENSMUST00000198379 1346 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Rfx1P48377 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Htr1b-202ENSMUST00000183482 4724 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
Rfx1P48377 Sema4d-201ENSMUST00000021900 4482 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC13.62□□□□□ -0.23
Rfx1P48377 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
Rfx1P48377 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 CT010447.1-201ENSMUST00000225657 1608 ntBASIC13.62□□□□□ -0.23
Rfx1P48377 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC13.62□□□□□ -0.23
Rfx1P48377 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.62□□□□□ -0.23
Rfx1P48377 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC13.62□□□□□ -0.23
Rfx1P48377 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Rfx1P48377 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC13.62□□□□□ -0.23
Rfx1P48377 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC13.62□□□□□ -0.23
Rfx1P48377 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Rfx1P48377 Myo1h-210ENSMUST00000202006 4631 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Rfx1P48377 Sphk2-202ENSMUST00000107737 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
Rfx1P48377 Fhdc1-201ENSMUST00000091002 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Lman1-201ENSMUST00000048260 3563 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Dzip1l-204ENSMUST00000112886 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Slc45a1-202ENSMUST00000117997 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Rfx1P48377 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Tnk2-207ENSMUST00000115126 4358 ntTSL 5 BASIC13.61□□□□□ -0.23
Rfx1P48377 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Slc4a8-204ENSMUST00000162049 3532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Rfx1P48377 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC13.61□□□□□ -0.23
Rfx1P48377 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC13.61□□□□□ -0.23
Rfx1P48377 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
Rfx1P48377 Gm4310-201ENSMUST00000177847 889 ntBASIC13.61□□□□□ -0.23
Rfx1P48377 Gm27046-201ENSMUST00000182160 463 ntBASIC13.61□□□□□ -0.23
Rfx1P48377 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC13.61□□□□□ -0.23
Rfx1P48377 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC13.61□□□□□ -0.23
Rfx1P48377 AC102569.1-201ENSMUST00000221563 685 ntBASIC13.61□□□□□ -0.23
Rfx1P48377 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Rfx1P48377 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Rfx1P48377 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Rin1-208ENSMUST00000225427 4503 ntAPPRIS P2 BASIC13.61□□□□□ -0.23
Rfx1P48377 Ano10-203ENSMUST00000214409 2384 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Git1-202ENSMUST00000100812 3476 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Rfx1P48377 Gm10699-201ENSMUST00000098916 2130 ntBASIC13.61□□□□□ -0.23
Rfx1P48377 Mrgpre-201ENSMUST00000054048 3761 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 AC131068.2-201ENSMUST00000226175 1453 ntBASIC13.61□□□□□ -0.23
Rfx1P48377 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Rfx1P48377 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Rfx1P48377 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Rfx1P48377 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC13.6□□□□□ -0.23
Rfx1P48377 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 Hepacam-201ENSMUST00000051839 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 AA474408-201ENSMUST00000098110 3339 ntBASIC13.6□□□□□ -0.23
Rfx1P48377 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Rfx1P48377 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Rfx1P48377 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC13.6□□□□□ -0.23
Rfx1P48377 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Rfx1P48377 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms