Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Sox6P40645 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Sox6P40645 Gm10686-201ENSMUST00000215389 3247 ntBASIC10.77□□□□□ -0.69
Sox6P40645 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Sox6P40645 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Sox6P40645 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Fn1-203ENSMUST00000186129 7797 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Derl2-206ENSMUST00000143850 3666 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC10.76□□□□□ -0.69
Sox6P40645 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Pcdh11x-202ENSMUST00000113358 8607 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
Sox6P40645 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC10.76□□□□□ -0.69
Sox6P40645 Gm11511-201ENSMUST00000118146 540 ntBASIC10.76□□□□□ -0.69
Sox6P40645 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC10.76□□□□□ -0.69
Sox6P40645 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC10.76□□□□□ -0.69
Sox6P40645 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC10.76□□□□□ -0.69
Sox6P40645 Gm18212-201ENSMUST00000211678 889 ntBASIC10.76□□□□□ -0.69
Sox6P40645 AC159205.5-202ENSMUST00000224849 386 ntBASIC10.76□□□□□ -0.69
Sox6P40645 Gm807-202ENSMUST00000224929 408 ntBASIC10.76□□□□□ -0.69
Sox6P40645 AC093022.1-201ENSMUST00000226949 1072 ntBASIC10.76□□□□□ -0.69
Sox6P40645 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Gm5455-201ENSMUST00000058710 715 ntBASIC10.76□□□□□ -0.69
Sox6P40645 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Sox6P40645 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Gm6189-201ENSMUST00000164487 2082 ntBASIC10.76□□□□□ -0.69
Sox6P40645 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Styx-205ENSMUST00000226873 12974 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Sox6P40645 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC10.76□□□□□ -0.69
Sox6P40645 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 C4b-201ENSMUST00000069507 5379 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
Sox6P40645 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Sox6P40645 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Gm21939-201ENSMUST00000221137 2773 ntBASIC10.76□□□□□ -0.69
Sox6P40645 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Sox6P40645 Scyl2-204ENSMUST00000174252 4817 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Atg2a-201ENSMUST00000045351 6371 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Fam234b-201ENSMUST00000111915 4221 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Hivep1-201ENSMUST00000060148 8753 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Gm14005-209ENSMUST00000224993 1832 ntBASIC10.75□□□□□ -0.69
Sox6P40645 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC10.75□□□□□ -0.69
Sox6P40645 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Gm5419-201ENSMUST00000119301 527 ntBASIC10.75□□□□□ -0.69
Sox6P40645 Gm14017-201ENSMUST00000121934 386 ntBASIC10.75□□□□□ -0.69
Sox6P40645 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC10.75□□□□□ -0.69
Sox6P40645 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC10.75□□□□□ -0.69
Sox6P40645 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Gm38241-201ENSMUST00000192641 898 ntBASIC10.75□□□□□ -0.69
Sox6P40645 Ighv4-2-201ENSMUST00000192975 362 ntBASIC10.75□□□□□ -0.69
Sox6P40645 AY036118-201ENSMUST00000200021 923 ntBASIC10.75□□□□□ -0.69
Sox6P40645 Gm8956-201ENSMUST00000203939 825 ntBASIC10.75□□□□□ -0.69
Sox6P40645 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC10.75□□□□□ -0.69
Sox6P40645 CT573034.1-201ENSMUST00000222983 313 ntBASIC10.75□□□□□ -0.69
Sox6P40645 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Hyou1-206ENSMUST00000161318 4489 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Clasp2-201ENSMUST00000111838 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Gm19040-201ENSMUST00000203280 4726 ntBASIC10.75□□□□□ -0.69
Sox6P40645 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sox6P40645 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC10.75□□□□□ -0.69
Sox6P40645 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
Sox6P40645 Ppp1r10-201ENSMUST00000087210 4222 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms