Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Traf1P39428 Gm25766-201ENSMUST00000104101 131 ntBASIC13.28□□□□□ -0.28
Traf1P39428 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC13.28□□□□□ -0.28
Traf1P39428 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Gm16166-201ENSMUST00000118291 787 ntBASIC13.28□□□□□ -0.28
Traf1P39428 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC13.28□□□□□ -0.28
Traf1P39428 Mir6998-201ENSMUST00000183343 64 ntBASIC13.28□□□□□ -0.28
Traf1P39428 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC13.28□□□□□ -0.28
Traf1P39428 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC13.28□□□□□ -0.28
Traf1P39428 Gm44329-201ENSMUST00000197469 112 ntBASIC13.28□□□□□ -0.28
Traf1P39428 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC13.28□□□□□ -0.28
Traf1P39428 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC13.28□□□□□ -0.28
Traf1P39428 Gm5996-201ENSMUST00000211110 718 ntBASIC13.28□□□□□ -0.28
Traf1P39428 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Gm23105-201ENSMUST00000083719 134 ntBASIC13.28□□□□□ -0.28
Traf1P39428 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Traf1P39428 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Gm2128-201ENSMUST00000108009 2560 ntBASIC13.28□□□□□ -0.28
Traf1P39428 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Gm42498-201ENSMUST00000199981 1372 ntBASIC13.28□□□□□ -0.28
Traf1P39428 CT009713.5-203ENSMUST00000224218 2079 ntBASIC13.28□□□□□ -0.28
Traf1P39428 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Gm44190-201ENSMUST00000205083 1401 ntBASIC13.28□□□□□ -0.28
Traf1P39428 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Traf1P39428 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Traf1P39428 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Traf1P39428 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Traf1P39428 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Traf1P39428 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.28
Traf1P39428 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Traf1P39428 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Traf1P39428 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Traf1P39428 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Traf1P39428 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Traf1P39428 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Traf1P39428 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Traf1P39428 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC13.27□□□□□ -0.28
Traf1P39428 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Traf1P39428 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC13.27□□□□□ -0.29
Traf1P39428 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Traf1P39428 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
Traf1P39428 Gm25072-201ENSMUST00000175233 235 ntBASIC13.27□□□□□ -0.29
Traf1P39428 Gm26134-201ENSMUST00000178484 110 ntBASIC13.27□□□□□ -0.29
Traf1P39428 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC13.27□□□□□ -0.29
Traf1P39428 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC13.27□□□□□ -0.29
Traf1P39428 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC13.27□□□□□ -0.29
Traf1P39428 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Gm19046-201ENSMUST00000221263 1298 ntBASIC13.27□□□□□ -0.29
Traf1P39428 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC13.27□□□□□ -0.29
Traf1P39428 AC165154.1-201ENSMUST00000226661 340 ntBASIC13.27□□□□□ -0.29
Traf1P39428 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Traf1P39428 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Gm18642-201ENSMUST00000206642 1400 ntBASIC13.27□□□□□ -0.29
Traf1P39428 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Traf1P39428 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Traf1P39428 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Traf1P39428 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Traf1P39428 Gm43760-201ENSMUST00000202120 3015 ntBASIC13.26□□□□□ -0.29
Traf1P39428 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Traf1P39428 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC13.26□□□□□ -0.29
Traf1P39428 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC13.26□□□□□ -0.29
Traf1P39428 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC13.26□□□□□ -0.29
Traf1P39428 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Traf1P39428 Gm12899-201ENSMUST00000120565 551 ntBASIC13.26□□□□□ -0.29
Traf1P39428 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC13.26□□□□□ -0.29
Traf1P39428 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC13.26□□□□□ -0.29
Traf1P39428 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Gm21358-201ENSMUST00000191645 1659 ntBASIC13.26□□□□□ -0.29
Traf1P39428 Gm6655-201ENSMUST00000201932 1309 ntBASIC13.26□□□□□ -0.29
Traf1P39428 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Traf1P39428 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Traf1P39428 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC13.26□□□□□ -0.29
Traf1P39428 AC166359.1-201ENSMUST00000220243 1871 ntBASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 59.5 ms