Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Smc1aQ9CU62 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gm26660-202ENSMUST00000223620 4112 ntBASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gm8566-201ENSMUST00000120174 465 ntBASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gm3332-201ENSMUST00000189337 928 ntBASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gm4157-201ENSMUST00000211647 679 ntBASIC12.87□□□□□ -0.35
Smc1aQ9CU62 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC12.87□□□□□ -0.35
Smc1aQ9CU62 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gm9361-201ENSMUST00000198695 1507 ntBASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Smc1aQ9CU62 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gm13135-201ENSMUST00000117628 3121 ntBASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gm4034-201ENSMUST00000187674 480 ntBASIC12.86□□□□□ -0.35
Smc1aQ9CU62 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 AC140293.1-201ENSMUST00000225626 1247 ntBASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gm37368-201ENSMUST00000193173 3212 ntBASIC12.86□□□□□ -0.35
Smc1aQ9CU62 Gm9129-201ENSMUST00000218173 1689 ntBASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms