Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Gm36940-201ENSMUST00000194281 2036 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm10782-202ENSMUST00000223775 1480 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm18222-201ENSMUST00000202416 1387 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Zfp174-201ENSMUST00000041778 5897 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm29615-201ENSMUST00000185371 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm28224-201ENSMUST00000186078 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm29001-201ENSMUST00000186177 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm28292-201ENSMUST00000186593 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm28101-201ENSMUST00000187608 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm29076-201ENSMUST00000187689 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm28302-201ENSMUST00000187931 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm28646-201ENSMUST00000188220 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm28205-201ENSMUST00000189177 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm29032-201ENSMUST00000189797 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm28695-201ENSMUST00000190300 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm37448-201ENSMUST00000192795 697 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm38317-201ENSMUST00000195564 343 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm17812-201ENSMUST00000204935 318 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm9797-202ENSMUST00000218003 294 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 AC134869.4-202ENSMUST00000224350 837 ntBASIC10.82□□□□□ -0.68
Use1Q9CQ56 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gm26846-201ENSMUST00000181865 4869 ntTSL 5 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Lamb1-201ENSMUST00000002979 5784 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Slc23a2-201ENSMUST00000028815 6364 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Use1Q9CQ56 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Pml-207ENSMUST00000135310 4413 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Gm9466-201ENSMUST00000218144 2246 ntBASIC10.81□□□□□ -0.68
Use1Q9CQ56 Gm43860-201ENSMUST00000201742 2705 ntBASIC10.81□□□□□ -0.68
Use1Q9CQ56 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Cbfa2t2-204ENSMUST00000109725 6080 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Pde1c-201ENSMUST00000044505 3907 ntAPPRIS P4 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Tiam1-203ENSMUST00000114122 4596 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Gm25700-201ENSMUST00000177693 110 ntBASIC10.81□□□□□ -0.68
Use1Q9CQ56 Gm4310-201ENSMUST00000177847 889 ntBASIC10.81□□□□□ -0.68
Use1Q9CQ56 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Gm38341-201ENSMUST00000195357 515 ntBASIC10.81□□□□□ -0.68
Use1Q9CQ56 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 AY036118-201ENSMUST00000200021 923 ntBASIC10.81□□□□□ -0.68
Use1Q9CQ56 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Use1Q9CQ56 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms