Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm45594-201ENSMUST00000211717 241 ntBASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 AC132901.1-201ENSMUST00000224345 508 ntBASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Ubfd1Q78JW9 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gm43172-201ENSMUST00000202139 2137 ntBASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Rgr-203ENSMUST00000225070 4704 ntBASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gm15374-201ENSMUST00000119313 844 ntBASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Nutf2-202ENSMUST00000212042 645 ntAPPRIS P1 TSL 3 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 AC114645.1-201ENSMUST00000215831 187 ntBASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 AC166341.2-201ENSMUST00000220571 120 ntBASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 CT009536.2-201ENSMUST00000225370 665 ntBASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Gm37648-201ENSMUST00000192072 2563 ntBASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ubfd1Q78JW9 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Gm37859-201ENSMUST00000195529 2173 ntBASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Gm6211-201ENSMUST00000147973 4275 ntBASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Ubfd1Q78JW9 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 66.2 ms