Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm5703-201ENSMUST00000186658 3973 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Ddx52-201ENSMUST00000049257 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm2606-201ENSMUST00000100754 1002 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Selenof-202ENSMUST00000106211 1178 ntTSL 3 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm12286-201ENSMUST00000119246 1002 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm12341-201ENSMUST00000119724 503 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm12151-201ENSMUST00000121374 290 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Mpzl1-203ENSMUST00000191818 853 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm37858-201ENSMUST00000192759 1231 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm8869-201ENSMUST00000195222 947 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm8920-201ENSMUST00000196153 924 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm45299-202ENSMUST00000211011 765 ntTSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 AL589696.1-201ENSMUST00000225711 330 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Olfr510-201ENSMUST00000076289 945 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm18806-201ENSMUST00000207607 1775 ntBASIC12.19□□□□□ -0.46
Rnf40Q3U319 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Rnf40-206ENSMUST00000206914 3735 ntTSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Prdm6-202ENSMUST00000115398 1474 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Ccdc93-202ENSMUST00000112621 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rnf40Q3U319 Gm12296-201ENSMUST00000144922 3220 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Dyrk4-202ENSMUST00000078521 2252 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Ttc23-201ENSMUST00000032774 2492 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 4930521E06Rik-201ENSMUST00000186732 905 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Gm37490-201ENSMUST00000195566 724 ntBASIC12.18□□□□□ -0.46
Rnf40Q3U319 Gm33501-201ENSMUST00000209257 1193 ntTSL 5 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 AC125206.2-201ENSMUST00000217454 574 ntBASIC12.18□□□□□ -0.46
Rnf40Q3U319 Gm18387-201ENSMUST00000220333 702 ntBASIC12.18□□□□□ -0.46
Rnf40Q3U319 AC125070.1-201ENSMUST00000223523 555 ntTSL 5 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Lect2-202ENSMUST00000225183 823 ntBASIC12.18□□□□□ -0.46
Rnf40Q3U319 AC108416.1-202ENSMUST00000228927 1201 ntBASIC12.18□□□□□ -0.46
Rnf40Q3U319 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Gm8155-201ENSMUST00000216363 1612 ntBASIC12.18□□□□□ -0.46
Rnf40Q3U319 Hk3-201ENSMUST00000052949 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Gm12799-201ENSMUST00000118151 2560 ntBASIC12.18□□□□□ -0.46
Rnf40Q3U319 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC12.18□□□□□ -0.46
Rnf40Q3U319 G630064G18Rik-201ENSMUST00000209814 1795 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rnf40Q3U319 Slc20a1-201ENSMUST00000028880 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rnf40Q3U319 Mettl14-204ENSMUST00000174323 4202 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms