Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Gm43242-201ENSMUST00000199507 1776 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Zbtb45-205ENSMUST00000210282 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Gm45776-201ENSMUST00000212366 1522 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Traf1P39428 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Traf1P39428 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Traf1P39428 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
Traf1P39428 Gm12795-201ENSMUST00000117594 539 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Gm12856-201ENSMUST00000119471 1293 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Gm4879-201ENSMUST00000122190 1272 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC13.3□□□□□ -0.28
Traf1P39428 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
Traf1P39428 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC13.3□□□□□ -0.28
Traf1P39428 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Gm10731-201ENSMUST00000181171 448 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Gm28324-201ENSMUST00000187913 264 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Gm7504-201ENSMUST00000201449 424 ntBASIC13.3□□□□□ -0.28
Traf1P39428 AC140293.1-201ENSMUST00000225626 1247 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Gm23680-201ENSMUST00000083162 164 ntBASIC13.3□□□□□ -0.28
Traf1P39428 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
Traf1P39428 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Traf1P39428 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC13.3□□□□□ -0.28
Traf1P39428 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC13.3□□□□□ -0.28
Traf1P39428 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Traf1P39428 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC13.29□□□□□ -0.28
Traf1P39428 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Traf1P39428 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC13.29□□□□□ -0.28
Traf1P39428 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Gm7841-201ENSMUST00000122108 1629 ntBASIC13.29□□□□□ -0.28
Traf1P39428 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
Traf1P39428 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Gm4294-201ENSMUST00000105169 614 ntBASIC13.29□□□□□ -0.28
Traf1P39428 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC13.29□□□□□ -0.28
Traf1P39428 Gm24398-201ENSMUST00000157870 109 ntBASIC13.29□□□□□ -0.28
Traf1P39428 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Traf1P39428 Gm43058-201ENSMUST00000197645 625 ntBASIC13.29□□□□□ -0.28
Traf1P39428 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC13.29□□□□□ -0.28
Traf1P39428 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC13.29□□□□□ -0.28
Traf1P39428 CT573047.1-201ENSMUST00000223652 851 ntBASIC13.29□□□□□ -0.28
Traf1P39428 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Traf1P39428 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC13.29□□□□□ -0.28
Traf1P39428 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Traf1P39428 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Traf1P39428 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Traf1P39428 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
Traf1P39428 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Traf1P39428 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Traf1P39428 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC13.28□□□□□ -0.28
Traf1P39428 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms