Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm43667-201ENSMUST00000198616 1095 ntBASIC14.8□□□□□ -0.04
Col18a1P39061 Phf5a-201ENSMUST00000023117 864 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col18a1P39061 Larp1b-204ENSMUST00000099121 1030 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col18a1P39061 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Col18a1P39061 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col18a1P39061 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col18a1P39061 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col18a1P39061 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col18a1P39061 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Col18a1P39061 Ano4-202ENSMUST00000181976 1410 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Dmtf1-201ENSMUST00000071921 3806 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Pfn4-202ENSMUST00000178879 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Gm7790-201ENSMUST00000118716 1310 ntBASIC14.79□□□□□ -0.04
Col18a1P39061 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col18a1P39061 D330041H03Rik-202ENSMUST00000180390 411 ntTSL 2 BASIC14.79□□□□□ -0.04
Col18a1P39061 Gm5801-201ENSMUST00000182247 780 ntBASIC14.79□□□□□ -0.04
Col18a1P39061 AC166061.1-201ENSMUST00000225163 1138 ntBASIC14.79□□□□□ -0.04
Col18a1P39061 Scgb3a1-201ENSMUST00000043873 493 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Scgb3a1-202ENSMUST00000076006 598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Deup1-203ENSMUST00000115593 3019 ntTSL 5 BASIC14.79□□□□□ -0.04
Col18a1P39061 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col18a1P39061 Vgll4-201ENSMUST00000032459 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Gm38227-201ENSMUST00000193036 1602 ntBASIC14.79□□□□□ -0.04
Col18a1P39061 Gm13120-201ENSMUST00000117343 1446 ntBASIC14.79□□□□□ -0.04
Col18a1P39061 Gm13104-201ENSMUST00000119651 1446 ntBASIC14.79□□□□□ -0.04
Col18a1P39061 Fkbp6-201ENSMUST00000044972 1447 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Col18a1P39061 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col18a1P39061 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Vps45-201ENSMUST00000015891 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col18a1P39061 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Als2cr12-206ENSMUST00000191565 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Gm12961-201ENSMUST00000120507 1050 ntBASIC14.78□□□□□ -0.04
Col18a1P39061 Faap24-203ENSMUST00000154597 831 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
Col18a1P39061 C430039J16Rik-201ENSMUST00000181148 658 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Gm38313-201ENSMUST00000191953 1266 ntBASIC14.78□□□□□ -0.04
Col18a1P39061 Gm2566-201ENSMUST00000201267 431 ntBASIC14.78□□□□□ -0.04
Col18a1P39061 A1cf-204ENSMUST00000224564 1432 ntBASIC14.78□□□□□ -0.04
Col18a1P39061 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
Col18a1P39061 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
Col18a1P39061 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC14.78□□□□□ -0.04
Col18a1P39061 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.78□□□□□ -0.04
Col18a1P39061 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Gm16439-201ENSMUST00000100687 564 ntBASIC14.78□□□□□ -0.04
Col18a1P39061 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC14.78□□□□□ -0.04
Col18a1P39061 Gm26021-201ENSMUST00000158664 131 ntBASIC14.78□□□□□ -0.04
Col18a1P39061 Igsf5-201ENSMUST00000000163 1851 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col18a1P39061 Mir8104-201ENSMUST00000185165 101 ntBASIC14.78□□□□□ -0.04
Col18a1P39061 Crip1-205ENSMUST00000199089 509 ntTSL 3 BASIC14.78□□□□□ -0.04
Col18a1P39061 Pcdh7-207ENSMUST00000199310 659 ntTSL 2 BASIC14.78□□□□□ -0.04
Col18a1P39061 Sparc-208ENSMUST00000214685 1269 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
Col18a1P39061 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Col18a1P39061 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col18a1P39061 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col18a1P39061 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col18a1P39061 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col18a1P39061 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col18a1P39061 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col18a1P39061 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col18a1P39061 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Col18a1P39061 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Col18a1P39061 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Cd14-201ENSMUST00000061829 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Col18a1P39061 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Gm5046-201ENSMUST00000100608 611 ntBASIC14.77□□□□□ -0.05
Col18a1P39061 Ppih-205ENSMUST00000106321 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Sh2d1a-203ENSMUST00000115070 782 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Gm15720-201ENSMUST00000117133 282 ntBASIC14.77□□□□□ -0.05
Col18a1P39061 Gm8809-201ENSMUST00000119367 743 ntBASIC14.77□□□□□ -0.05
Col18a1P39061 D430040D24Rik-201ENSMUST00000149224 910 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Gm16013-201ENSMUST00000152249 353 ntTSL 3 BASIC14.77□□□□□ -0.05
Col18a1P39061 Gm26750-201ENSMUST00000181718 711 ntTSL 5 BASIC14.77□□□□□ -0.05
Col18a1P39061 Gm28893-201ENSMUST00000190951 1108 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Gm38135-201ENSMUST00000195068 502 ntBASIC14.77□□□□□ -0.05
Col18a1P39061 Gm44196-203ENSMUST00000204359 1190 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Gm6008-201ENSMUST00000206542 874 ntBASIC14.77□□□□□ -0.05
Col18a1P39061 Saa-ps-201ENSMUST00000211148 320 ntBASIC14.77□□□□□ -0.05
Col18a1P39061 AC132881.1-201ENSMUST00000223780 1062 ntBASIC14.77□□□□□ -0.05
Col18a1P39061 Gm11437-201ENSMUST00000050771 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col18a1P39061 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms