Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm25063-201ENSMUST00000104666 94 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm13668-201ENSMUST00000119237 1001 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 n-R5s84-201ENSMUST00000122591 109 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm15744-201ENSMUST00000161734 213 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm5100-201ENSMUST00000195631 589 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm19091-201ENSMUST00000208120 978 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm18065-201ENSMUST00000221395 526 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 AC099645.1-201ENSMUST00000226476 1105 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Lgi3-203ENSMUST00000226548 1001 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.2□□□□□ -0.46
Sf3b1Q99NB9 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm4294-201ENSMUST00000105169 614 ntBASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm14892-201ENSMUST00000117636 267 ntBASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm11500-201ENSMUST00000118237 601 ntBASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm15549-201ENSMUST00000121595 622 ntBASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Mir6407-201ENSMUST00000184510 101 ntBASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sf3b1Q99NB9 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Gm37600-201ENSMUST00000193764 3292 ntBASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Gm11675-201ENSMUST00000121873 832 ntBASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sf3b1Q99NB9 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms