Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Gm14398-201ENSMUST00000117287 1073 ntBASIC16.12■□□□□ 0.17
Usp47Q8BY87 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Gm28215-201ENSMUST00000186146 346 ntTSL 5 BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Gm9369-201ENSMUST00000196009 733 ntBASIC16.12■□□□□ 0.17
Usp47Q8BY87 Gm45410-201ENSMUST00000211331 1093 ntBASIC16.12■□□□□ 0.17
Usp47Q8BY87 Olfr889-201ENSMUST00000072290 945 ntTSL 5 BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Tex10-206ENSMUST00000164866 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp47Q8BY87 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Tex13c1-201ENSMUST00000105113 2074 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm25063-201ENSMUST00000104666 94 ntBASIC16.11■□□□□ 0.17
Usp47Q8BY87 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm13668-201ENSMUST00000119237 1001 ntBASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm37028-201ENSMUST00000194276 107 ntBASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm3726-201ENSMUST00000203110 785 ntBASIC16.11■□□□□ 0.17
Usp47Q8BY87 AC122035.1-201ENSMUST00000227576 1016 ntBASIC16.11■□□□□ 0.17
Usp47Q8BY87 Prrxl1-205ENSMUST00000228878 723 ntBASIC16.11■□□□□ 0.17
Usp47Q8BY87 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm16380-201ENSMUST00000077997 478 ntBASIC16.11■□□□□ 0.17
Usp47Q8BY87 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp47Q8BY87 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Kif22-ps-201ENSMUST00000119302 1984 ntBASIC16.1■□□□□ 0.17
Usp47Q8BY87 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Usp47Q8BY87 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC16.1■□□□□ 0.17
Usp47Q8BY87 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Gm5822-201ENSMUST00000161562 1378 ntBASIC16.1■□□□□ 0.17
Usp47Q8BY87 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Usp47Q8BY87 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp47Q8BY87 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp47Q8BY87 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Usp47Q8BY87 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp47Q8BY87 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Usp47Q8BY87 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp47Q8BY87 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Usp47Q8BY87 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms