Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Usp40Q8BWR4 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Usp40Q8BWR4 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Gm44806-201ENSMUST00000205574 2303 ntBASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Ntm-201ENSMUST00000075069 3022 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 AC167022.1-201ENSMUST00000218647 1458 ntBASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Gm12783-201ENSMUST00000121425 397 ntBASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Gm25580-201ENSMUST00000083409 327 ntBASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Usp40Q8BWR4 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC15.67■□□□□ 0.1
Usp40Q8BWR4 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Gm5308-201ENSMUST00000196752 1354 ntBASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Gm22146-201ENSMUST00000157397 288 ntBASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Ighv2-1-201ENSMUST00000170946 353 ntBASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Gm26976-201ENSMUST00000182929 908 ntBASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Gm9353-201ENSMUST00000200472 604 ntBASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 AC168279.1-201ENSMUST00000214611 382 ntBASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Usp40Q8BWR4 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Snord23-201ENSMUST00000116828 109 ntBASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Gm12816-201ENSMUST00000118069 1212 ntBASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Gm3828-201ENSMUST00000121817 257 ntBASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Gm37365-201ENSMUST00000193109 409 ntBASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Gm9102-201ENSMUST00000219250 465 ntBASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Usp40Q8BWR4 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Usp40Q8BWR4 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms