Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Gm10051-201ENSMUST00000145209 414 ntBASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Gm3329-201ENSMUST00000159873 556 ntBASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Gm44270-201ENSMUST00000203084 1234 ntBASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Gm37122-201ENSMUST00000195313 1567 ntBASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC12.29□□□□□ -0.44
Upf3bQ3ULL6 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Ap1s2-203ENSMUST00000112294 3199 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm18198-201ENSMUST00000204986 1551 ntBASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm12247-201ENSMUST00000117585 670 ntBASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm15352-201ENSMUST00000118696 270 ntBASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm11956-201ENSMUST00000119525 512 ntBASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm43852-201ENSMUST00000202098 917 ntBASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm44008-201ENSMUST00000204345 412 ntBASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 AC159819.2-201ENSMUST00000216151 342 ntBASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 AC166344.1-201ENSMUST00000223745 674 ntBASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Upf3bQ3ULL6 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC12.27□□□□□ -0.44
Upf3bQ3ULL6 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC12.27□□□□□ -0.44
Upf3bQ3ULL6 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3bQ3ULL6 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Upf3bQ3ULL6 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Upf3bQ3ULL6 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Gm18367-201ENSMUST00000176139 600 ntBASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Gm18827-201ENSMUST00000188341 790 ntBASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC12.27□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms