Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm34312-201ENSMUST00000204650 1092 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Arhgef33-210ENSMUST00000225548 456 ntBASIC12.73□□□□□ -0.37
Col6a1Q04857 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC12.73□□□□□ -0.37
Col6a1Q04857 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Col6a1Q04857 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm40377-201ENSMUST00000204604 2015 ntBASIC12.72□□□□□ -0.37
Col6a1Q04857 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC12.72□□□□□ -0.37
Col6a1Q04857 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm18798-201ENSMUST00000187264 1700 ntBASIC12.72□□□□□ -0.37
Col6a1Q04857 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gcg-201ENSMUST00000102733 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Ighv1-50-201ENSMUST00000103521 390 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Col6a1Q04857 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC12.72□□□□□ -0.37
Col6a1Q04857 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm9673-201ENSMUST00000119287 781 ntBASIC12.72□□□□□ -0.37
Col6a1Q04857 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Col6a1Q04857 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm25554-201ENSMUST00000158075 113 ntBASIC12.72□□□□□ -0.37
Col6a1Q04857 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Col6a1Q04857 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm25677-201ENSMUST00000174983 72 ntBASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm5706-201ENSMUST00000181525 993 ntBASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm9081-201ENSMUST00000182346 991 ntBASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC12.72□□□□□ -0.37
Col6a1Q04857 AC098716.1-201ENSMUST00000213527 703 ntBASIC12.72□□□□□ -0.37
Col6a1Q04857 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Gm38376-201ENSMUST00000195493 2253 ntBASIC12.72□□□□□ -0.37
Col6a1Q04857 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Col6a1Q04857 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Col6a1Q04857 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Col6a1Q04857 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.71□□□□□ -0.37
Col6a1Q04857 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC12.71□□□□□ -0.37
Col6a1Q04857 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC12.71□□□□□ -0.37
Col6a1Q04857 Gm13445-201ENSMUST00000121664 307 ntBASIC12.71□□□□□ -0.37
Col6a1Q04857 Mrpl24-204ENSMUST00000121920 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Gm12906-201ENSMUST00000154610 441 ntBASIC12.71□□□□□ -0.37
Col6a1Q04857 Gm26368-201ENSMUST00000157826 118 ntBASIC12.71□□□□□ -0.37
Col6a1Q04857 Gm16167-201ENSMUST00000160428 1065 ntBASIC12.71□□□□□ -0.37
Col6a1Q04857 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Gm6450-201ENSMUST00000200896 574 ntBASIC12.71□□□□□ -0.37
Col6a1Q04857 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Col6a1Q04857 CT009527.1-201ENSMUST00000224205 339 ntBASIC12.71□□□□□ -0.37
Col6a1Q04857 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Col6a1Q04857 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Col6a1Q04857 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Col6a1Q04857 Gm21759-201ENSMUST00000178345 1828 ntBASIC12.71□□□□□ -0.38
Col6a1Q04857 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC12.71□□□□□ -0.38
Col6a1Q04857 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Col6a1Q04857 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Col6a1Q04857 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Col6a1Q04857 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 64.3 ms