Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm42657-201ENSMUST00000201746 211 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm5599-201ENSMUST00000209602 788 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 CT009527.1-201ENSMUST00000224205 339 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Lrba-202ENSMUST00000192145 8843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
Chd3B1AR17 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Zfp85os-202ENSMUST00000143812 1784 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Chd3B1AR17 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm42706-201ENSMUST00000199733 1910 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm9415-201ENSMUST00000200462 1321 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC11.24□□□□□ -0.61
Chd3B1AR17 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm11500-201ENSMUST00000118237 601 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC11.24□□□□□ -0.61
Chd3B1AR17 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm37284-201ENSMUST00000193607 539 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 AC154589.2-201ENSMUST00000228847 251 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm25517-201ENSMUST00000083865 134 ntBASIC11.24□□□□□ -0.61
Chd3B1AR17 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC11.24□□□□□ -0.61
Chd3B1AR17 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Chd3B1AR17 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC11.24□□□□□ -0.61
Chd3B1AR17 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC11.24□□□□□ -0.61
Chd3B1AR17 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Chd3B1AR17 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Chd3B1AR17 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC11.23□□□□□ -0.61
Chd3B1AR17 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Chd3B1AR17 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC11.23□□□□□ -0.61
Chd3B1AR17 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC11.23□□□□□ -0.61
Chd3B1AR17 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Gm19015-201ENSMUST00000184002 1189 ntBASIC11.23□□□□□ -0.61
Chd3B1AR17 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC11.23□□□□□ -0.61
Chd3B1AR17 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC11.23□□□□□ -0.61
Chd3B1AR17 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Gm18806-201ENSMUST00000207607 1775 ntBASIC11.23□□□□□ -0.61
Chd3B1AR17 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Chd3B1AR17 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms