Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Gm15329-201ENSMUST00000121408 155 ntBASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Gm15549-201ENSMUST00000121595 622 ntBASIC12.48□□□□□ -0.41
Trim54Q9ERP3 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Gm17798-201ENSMUST00000182282 1035 ntBASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Gm7593-201ENSMUST00000187246 644 ntBASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Gm45120-201ENSMUST00000208880 408 ntBASIC12.48□□□□□ -0.41
Trim54Q9ERP3 CT030170.2-201ENSMUST00000223267 126 ntBASIC12.48□□□□□ -0.41
Trim54Q9ERP3 AC154184.3-201ENSMUST00000225620 1090 ntBASIC12.48□□□□□ -0.41
Trim54Q9ERP3 AC165154.1-201ENSMUST00000226661 340 ntBASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Trim54Q9ERP3 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.47□□□□□ -0.41
Trim54Q9ERP3 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Gm11340-201ENSMUST00000119226 412 ntBASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Gm20495-201ENSMUST00000173902 235 ntBASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Gm18561-201ENSMUST00000206027 804 ntBASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 AC114645.1-201ENSMUST00000215831 187 ntBASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Gm3619-201ENSMUST00000219947 775 ntBASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Trim54Q9ERP3 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Trim54Q9ERP3 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms