Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Pou6f1-204ENSMUST00000176271 4575 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm8343-201ENSMUST00000182705 994 ntBASIC10.86□□□□□ -0.67
Use1Q9CQ56 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC10.86□□□□□ -0.67
Use1Q9CQ56 Mir8093-201ENSMUST00000185043 137 ntBASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm38117-201ENSMUST00000194653 939 ntBASIC10.86□□□□□ -0.67
Use1Q9CQ56 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm45865-201ENSMUST00000211815 945 ntBASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC10.86□□□□□ -0.67
Use1Q9CQ56 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC10.86□□□□□ -0.67
Use1Q9CQ56 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Ptprg-201ENSMUST00000022264 9213 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm43908-201ENSMUST00000205074 1472 ntBASIC10.86□□□□□ -0.67
Use1Q9CQ56 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Gm6015-201ENSMUST00000217493 1586 ntBASIC10.86□□□□□ -0.67
Use1Q9CQ56 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Use1Q9CQ56 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Sez6l-201ENSMUST00000075387 6055 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Tiam1-204ENSMUST00000114124 7406 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm14127-201ENSMUST00000117906 678 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm14381-201ENSMUST00000122105 414 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm27627-201ENSMUST00000183644 150 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm8856-201ENSMUST00000185254 1144 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm44364-201ENSMUST00000198368 141 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm44974-201ENSMUST00000206387 1279 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm13097-201ENSMUST00000210722 397 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 AC159205.5-202ENSMUST00000224849 386 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Gm8399-201ENSMUST00000082300 1117 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Ankrd26-201ENSMUST00000112830 6930 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Pitpnm2os2-203ENSMUST00000198466 2467 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Slc45a4-202ENSMUST00000076224 4240 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Use1Q9CQ56 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC10.85□□□□□ -0.67
Use1Q9CQ56 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Use1Q9CQ56 AU019823-201ENSMUST00000131351 3316 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Gm45199-201ENSMUST00000207640 1507 ntBASIC10.84□□□□□ -0.67
Use1Q9CQ56 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Use1Q9CQ56 AC167565.1-201ENSMUST00000226980 1833 ntBASIC10.84□□□□□ -0.67
Use1Q9CQ56 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Use1Q9CQ56 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC10.84□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms