Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Sox9Q04887 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Rab3c-202ENSMUST00000223922 2398 ntBASIC11.92□□□□□ -0.5
Sox9Q04887 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Sox9Q04887 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Sox9Q04887 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Sox9Q04887 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Mrps36-203ENSMUST00000109333 701 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Tex29-204ENSMUST00000166638 561 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
Sox9Q04887 Gm26875-201ENSMUST00000181006 950 ntBASIC11.92□□□□□ -0.5
Sox9Q04887 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC11.92□□□□□ -0.5
Sox9Q04887 Mir7051-201ENSMUST00000184167 73 ntBASIC11.92□□□□□ -0.5
Sox9Q04887 Tmem242-202ENSMUST00000185896 780 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC11.92□□□□□ -0.5
Sox9Q04887 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC11.92□□□□□ -0.5
Sox9Q04887 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Sox9Q04887 Mrpl33-201ENSMUST00000031024 478 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Matr3-216ENSMUST00000190653 1846 ntTSL 5 BASIC11.92□□□□□ -0.5
Sox9Q04887 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Sox9Q04887 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
Sox9Q04887 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Sox9Q04887 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC11.92□□□□□ -0.5
Sox9Q04887 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC11.92□□□□□ -0.5
Sox9Q04887 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Selenbp2-204ENSMUST00000173849 1323 ntTSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm44152-201ENSMUST00000205007 1691 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm8019-201ENSMUST00000119317 587 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Gm12736-201ENSMUST00000119330 236 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Gm15136-201ENSMUST00000120552 533 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Gm15815-201ENSMUST00000120569 255 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm15329-201ENSMUST00000121408 155 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Gm15982-201ENSMUST00000121681 554 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Gm4943-201ENSMUST00000132879 424 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 4930507D10Rik-201ENSMUST00000137411 1152 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm14004-201ENSMUST00000138875 590 ntTSL 2 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC11.91□□□□□ -0.5
Sox9Q04887 4930524O07Rik-202ENSMUST00000162334 293 ntTSL 2 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm7765-201ENSMUST00000182585 974 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Gm28651-201ENSMUST00000185335 644 ntTSL 3 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm37207-201ENSMUST00000194284 296 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Tmprss11c-202ENSMUST00000196462 1257 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 D5Ertd605e-201ENSMUST00000201128 1081 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm39091-201ENSMUST00000206189 553 ntTSL 2 BASIC11.91□□□□□ -0.5
Sox9Q04887 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 AC169511.1-201ENSMUST00000227639 995 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Rps3a2-201ENSMUST00000074245 792 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Rps3a3-201ENSMUST00000074680 795 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Sox9Q04887 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC11.91□□□□□ -0.5
Sox9Q04887 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Gm9796-201ENSMUST00000062249 2250 ntBASIC11.91□□□□□ -0.5
Sox9Q04887 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 65.3 ms