Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Mirlet7i-201ENSMUST00000083472 85 ntBASIC13.36□□□□□ -0.27
Traf1P39428 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Traf1P39428 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Traf1P39428 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
Traf1P39428 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Traf1P39428 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Traf1P39428 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Traf1P39428 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC13.35□□□□□ -0.27
Traf1P39428 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC13.35□□□□□ -0.27
Traf1P39428 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Traf1P39428 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Gm11960-201ENSMUST00000122068 925 ntBASIC13.35□□□□□ -0.27
Traf1P39428 Gm13182-201ENSMUST00000122241 312 ntBASIC13.35□□□□□ -0.27
Traf1P39428 Mir1901-201ENSMUST00000122616 78 ntBASIC13.35□□□□□ -0.27
Traf1P39428 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Traf1P39428 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
Traf1P39428 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Traf1P39428 Gm37458-201ENSMUST00000194055 410 ntBASIC13.35□□□□□ -0.27
Traf1P39428 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC13.35□□□□□ -0.27
Traf1P39428 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC13.35□□□□□ -0.27
Traf1P39428 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC13.35□□□□□ -0.27
Traf1P39428 Prrxl1-205ENSMUST00000228878 723 ntBASIC13.35□□□□□ -0.27
Traf1P39428 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Traf1P39428 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC13.35□□□□□ -0.27
Traf1P39428 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Traf1P39428 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Gm43075-201ENSMUST00000198613 3905 ntBASIC13.35□□□□□ -0.27
Traf1P39428 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC13.35□□□□□ -0.27
Traf1P39428 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Traf1P39428 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC13.34□□□□□ -0.27
Traf1P39428 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Traf1P39428 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Gm13347-201ENSMUST00000120298 1353 ntBASIC13.34□□□□□ -0.27
Traf1P39428 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC13.34□□□□□ -0.27
Traf1P39428 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC13.34□□□□□ -0.27
Traf1P39428 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Traf1P39428 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC13.34□□□□□ -0.27
Traf1P39428 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC13.34□□□□□ -0.27
Traf1P39428 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Traf1P39428 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC13.34□□□□□ -0.27
Traf1P39428 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Gm10752-201ENSMUST00000218348 729 ntBASIC13.34□□□□□ -0.27
Traf1P39428 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Traf1P39428 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Traf1P39428 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
Traf1P39428 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
Traf1P39428 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Traf1P39428 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC13.34□□□□□ -0.27
Traf1P39428 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Traf1P39428 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Traf1P39428 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 69.7 ms