Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Fabp12-202ENSMUST00000117917 648 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm12461-201ENSMUST00000120231 1239 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Cd63-ps-202ENSMUST00000154992 717 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm23699-201ENSMUST00000158835 135 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm5916-201ENSMUST00000168452 1142 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm26727-201ENSMUST00000180773 366 ntAPPRIS P1 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm8705-201ENSMUST00000180823 812 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm5706-201ENSMUST00000181525 993 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm28934-201ENSMUST00000186491 346 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm28199-201ENSMUST00000187127 619 ntTSL 3 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm28962-201ENSMUST00000187993 621 ntTSL 5 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm28692-202ENSMUST00000189645 621 ntTSL 5 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm37560-201ENSMUST00000194289 1000 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm37740-202ENSMUST00000194757 621 ntTSL 5 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Ighv1-60-201ENSMUST00000195816 405 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm43893-201ENSMUST00000203362 437 ntTSL 3 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm43867-201ENSMUST00000203860 525 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm6905-201ENSMUST00000205729 511 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm17931-201ENSMUST00000208132 634 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm8959-201ENSMUST00000213150 571 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Lilrb4a-205ENSMUST00000217705 1142 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm9797-202ENSMUST00000218003 294 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 AC159293.2-201ENSMUST00000222289 424 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Stap1-201ENSMUST00000031171 909 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Ccdc68-202ENSMUST00000080050 1235 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 9630028H03Rik-202ENSMUST00000153402 1559 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 AC129931.1-201ENSMUST00000228865 1861 ntBASIC9.23□□□□□ -0.93
Hoxd3P09027 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Mterf1a-201ENSMUST00000044746 1376 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
Hoxd3P09027 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm10558-201ENSMUST00000147494 1661 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
Hoxd3P09027 Gm42449-201ENSMUST00000200349 2258 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Adra1a-206ENSMUST00000225182 2337 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Nupl1-206ENSMUST00000225111 2936 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm43075-201ENSMUST00000198613 3905 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Mir680-2-201ENSMUST00000102163 110 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm23251-201ENSMUST00000103773 110 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Zfp965-202ENSMUST00000109042 1271 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm7851-201ENSMUST00000117574 323 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm11663-201ENSMUST00000117888 290 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm6335-201ENSMUST00000118081 1194 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm7816-201ENSMUST00000119884 1194 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm8566-201ENSMUST00000120174 465 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm15542-201ENSMUST00000121585 1194 ntBASIC9.22□□□□□ -0.93
Hoxd3P09027 Zfp973-202ENSMUST00000121956 1271 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
Hoxd3P09027 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm12811-201ENSMUST00000125237 667 ntTSL 3 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC9.22□□□□□ -0.93
Hoxd3P09027 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC9.22□□□□□ -0.93
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms