Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC9.48□□□□□ -0.89
Hmgb3O54879 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Gm6180-201ENSMUST00000065243 498 ntBASIC9.48□□□□□ -0.89
Hmgb3O54879 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
Hmgb3O54879 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC9.48□□□□□ -0.89
Hmgb3O54879 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC9.48□□□□□ -0.89
Hmgb3O54879 AC165351.1-201ENSMUST00000219078 2020 ntBASIC9.48□□□□□ -0.89
Hmgb3O54879 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
Hmgb3O54879 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Egf-201ENSMUST00000029653 4761 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Cemip-201ENSMUST00000064174 7111 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Dctn1-203ENSMUST00000113913 4163 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Tnk2-204ENSMUST00000115123 4225 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Pcdh15-216ENSMUST00000131724 6322 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm4984-201ENSMUST00000115987 360 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm11814-201ENSMUST00000119515 929 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm12960-201ENSMUST00000120017 1066 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm14928-201ENSMUST00000120198 477 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm13570-201ENSMUST00000140763 309 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC9.47□□□□□ -0.89
Hmgb3O54879 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm5866-201ENSMUST00000177881 973 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm27847-201ENSMUST00000183711 107 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm27375-201ENSMUST00000183799 107 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm27486-201ENSMUST00000184923 80 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm37201-201ENSMUST00000191845 523 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm18711-201ENSMUST00000199341 750 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Arhgef9-202ENSMUST00000113876 5342 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Pex7-201ENSMUST00000020182 8099 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Mical1-203ENSMUST00000119962 3565 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Vmn1r199-204ENSMUST00000227846 5523 ntAPPRIS ALT2 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Pigq-219ENSMUST00000208071 2926 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm37348-201ENSMUST00000193104 1789 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC9.47□□□□□ -0.89
Hmgb3O54879 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Myo18a-209ENSMUST00000108376 7374 ntTSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Hecw1-201ENSMUST00000110516 9460 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Arhgap21-208ENSMUST00000141298 6339 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
Hmgb3O54879 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
Hmgb3O54879 Zfp473-207ENSMUST00000149011 9230 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Mkrn2-201ENSMUST00000000449 6230 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Trim36-202ENSMUST00000167364 4543 ntTSL 5 BASIC9.46□□□□□ -0.89
Hmgb3O54879 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Itgam-203ENSMUST00000106242 4649 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Prrc1-201ENSMUST00000025490 4801 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Rapgef6-203ENSMUST00000102743 8189 ntAPPRIS P3 TSL 5 BASIC9.46□□□□□ -0.89
Hmgb3O54879 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 105.7 ms