Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Kdm4a-204ENSMUST00000106406 4663 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gm43916-201ENSMUST00000205062 967 ntBASIC10.74□□□□□ -0.69
Cdc40Q9DC48 AC159103.1-201ENSMUST00000228325 429 ntBASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gm10179-201ENSMUST00000086233 688 ntBASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gm43807-201ENSMUST00000200678 1781 ntBASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Slc1a2-202ENSMUST00000080210 11595 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdc40Q9DC48 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Smad9-201ENSMUST00000029371 5368 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm43242-201ENSMUST00000199507 1776 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm8146-201ENSMUST00000192106 1847 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm14724-201ENSMUST00000118400 537 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm11700-201ENSMUST00000119409 403 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Mir6546-201ENSMUST00000184460 62 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm10774-201ENSMUST00000188689 204 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Ighv1-48-201ENSMUST00000191795 294 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm44545-201ENSMUST00000208262 746 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 D9Wsu149-201ENSMUST00000214169 594 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm7395-201ENSMUST00000216059 1045 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Syt11-203ENSMUST00000107505 5020 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Gm38194-201ENSMUST00000194529 2211 ntBASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdc40Q9DC48 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdc40Q9DC48 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdc40Q9DC48 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdc40Q9DC48 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdc40Q9DC48 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdc40Q9DC48 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC10.72□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms