Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm24844-201ENSMUST00000158679 127 ntBASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm5523-201ENSMUST00000180415 997 ntBASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm44270-201ENSMUST00000203084 1234 ntBASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm17831-201ENSMUST00000205579 900 ntBASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm44506-201ENSMUST00000206278 965 ntBASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm9132-201ENSMUST00000210182 832 ntBASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm18198-201ENSMUST00000204986 1551 ntBASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Vps28Q9D1C8 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Gm7150-201ENSMUST00000122032 981 ntBASIC11.82□□□□□ -0.52
Vps28Q9D1C8 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Gm8459-201ENSMUST00000162504 760 ntBASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Gm43916-201ENSMUST00000205062 967 ntBASIC11.82□□□□□ -0.52
Vps28Q9D1C8 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 AC134869.4-202ENSMUST00000224350 837 ntBASIC11.82□□□□□ -0.52
Vps28Q9D1C8 AC154849.4-201ENSMUST00000224868 365 ntBASIC11.82□□□□□ -0.52
Vps28Q9D1C8 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Gm5859-201ENSMUST00000165401 2324 ntBASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC11.82□□□□□ -0.52
Vps28Q9D1C8 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gm36987-201ENSMUST00000194704 2979 ntBASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 BC043934-202ENSMUST00000185694 2356 ntBASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gm15881-201ENSMUST00000148792 942 ntBASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gm43852-201ENSMUST00000202098 917 ntBASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
Vps28Q9D1C8 Gm45770-201ENSMUST00000212105 616 ntBASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms