Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Gm5449-201ENSMUST00000081132 357 ntBASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Igtp-201ENSMUST00000035266 2022 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Ido1-202ENSMUST00000110667 1656 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Adam20-201ENSMUST00000056331 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Slc10a3-203ENSMUST00000114146 1902 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Nup98Q6PFD9 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm22594-201ENSMUST00000104251 130 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm5944-201ENSMUST00000118182 1001 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm7183-201ENSMUST00000213870 1005 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 AC126799.1-201ENSMUST00000221976 246 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 AC154461.3-201ENSMUST00000224831 573 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Tspan8-202ENSMUST00000080630 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm10020-201ENSMUST00000081993 612 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Krtap12-1-201ENSMUST00000092370 656 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm44740-201ENSMUST00000205603 1614 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Erich3-203ENSMUST00000189969 3460 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 AC022682.1-201ENSMUST00000224624 2023 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm6758-201ENSMUST00000119643 1055 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm11502-201ENSMUST00000120917 1211 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 AC159376.1-201ENSMUST00000218504 630 ntBASIC13.34□□□□□ -0.27
Nup98Q6PFD9 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 4631405J19Rik-201ENSMUST00000099699 1225 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Gm5122-202ENSMUST00000216854 1637 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Nup98Q6PFD9 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.27
Nup98Q6PFD9 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Nup98Q6PFD9 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Nup98Q6PFD9 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Gm11979-201ENSMUST00000119629 743 ntBASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Gm5555-201ENSMUST00000120352 1111 ntBASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Gm14255-201ENSMUST00000128846 248 ntTSL 5 BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Gm9372-201ENSMUST00000168454 430 ntBASIC13.33□□□□□ -0.28
Nup98Q6PFD9 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 E230029C05Rik-203ENSMUST00000208028 2066 ntBASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Gm43167-201ENSMUST00000202001 1606 ntBASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nup98Q6PFD9 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms