Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Pid1-205ENSMUST00000176720 450 ntTSL 5 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 AC159205.5-202ENSMUST00000224849 386 ntBASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 AC163667.3-201ENSMUST00000225774 222 ntBASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm10254-201ENSMUST00000052888 867 ntBASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm10702-201ENSMUST00000098929 1268 ntBASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm37348-201ENSMUST00000193104 1789 ntBASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm43242-201ENSMUST00000199507 1776 ntBASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Gm10548-201ENSMUST00000097631 2629 ntBASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 D830039M14Rik-202ENSMUST00000217740 3362 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 AC167022.1-201ENSMUST00000218647 1458 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Trpv6-201ENSMUST00000031902 2923 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 AC165351.1-201ENSMUST00000219078 2020 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm17193-201ENSMUST00000116345 691 ntTSL 5 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12616-201ENSMUST00000118594 382 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Rprl1-201ENSMUST00000158050 327 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm18734-201ENSMUST00000172937 808 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12624-201ENSMUST00000177615 382 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12621-201ENSMUST00000177760 382 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12615-201ENSMUST00000177970 382 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12622-201ENSMUST00000177975 382 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12627-201ENSMUST00000178412 382 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12625-201ENSMUST00000179122 382 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12614-201ENSMUST00000179586 382 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12613-201ENSMUST00000180323 382 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 AY036118-201ENSMUST00000200021 923 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 AU022133-201ENSMUST00000200601 873 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm7848-201ENSMUST00000210739 718 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm6991-201ENSMUST00000218475 1178 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 CT009718.3-201ENSMUST00000221116 367 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 AC154680.1-201ENSMUST00000224376 859 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm14267-206ENSMUST00000226870 1209 ntBASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Sh3rf1Q69ZI1 Gm42463-201ENSMUST00000198041 4886 ntBASIC11.71□□□□□ -0.54
Sh3rf1Q69ZI1 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC11.71□□□□□ -0.54
Sh3rf1Q69ZI1 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Sh3rf1Q69ZI1 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Sh3rf1Q69ZI1 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Sh3rf1Q69ZI1 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Sh3rf1Q69ZI1 AC154404.1-201ENSMUST00000223601 2077 ntBASIC11.71□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms