Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm10912-201ENSMUST00000104891 1661 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Kat7-205ENSMUST00000107734 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm15595-201ENSMUST00000120840 961 ntBASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 4933404K08Rik-201ENSMUST00000156977 1434 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Speer4cos-201ENSMUST00000162113 1083 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Glb1l2-207ENSMUST00000162702 2555 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 C030010L15Rik-201ENSMUST00000181465 715 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm28934-201ENSMUST00000186491 346 ntBASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm19214-201ENSMUST00000191956 1083 ntBASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm43391-201ENSMUST00000196145 883 ntTSL 5 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm5276-201ENSMUST00000196683 1047 ntBASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm21847-202ENSMUST00000198681 883 ntTSL 5 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm43531-201ENSMUST00000200676 1114 ntBASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm44830-201ENSMUST00000207667 584 ntBASIC12.24□□□□□ -0.45
Rnf40Q3U319 Olfr1288-202ENSMUST00000214816 1326 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Hmgb1-ps11-201ENSMUST00000221749 621 ntBASIC12.24□□□□□ -0.45
Rnf40Q3U319 AC154527.3-201ENSMUST00000225519 989 ntBASIC12.24□□□□□ -0.45
Rnf40Q3U319 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 n-R5s77-201ENSMUST00000083757 119 ntBASIC12.24□□□□□ -0.45
Rnf40Q3U319 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Rxfp2-201ENSMUST00000065745 2539 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Rnf40Q3U319 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Acot9-201ENSMUST00000026324 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Rsph10b-203ENSMUST00000166847 2878 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm37891-201ENSMUST00000195585 1326 ntBASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm10375-201ENSMUST00000100692 836 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm10377-201ENSMUST00000100695 899 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm3543-201ENSMUST00000111870 899 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm15429-201ENSMUST00000151268 798 ntBASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm3047-202ENSMUST00000177998 618 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 1700001F09Rik-201ENSMUST00000178178 884 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm8297-203ENSMUST00000178389 618 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm3460-202ENSMUST00000178927 618 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm21103-203ENSMUST00000179042 618 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm8159-203ENSMUST00000179231 618 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm3029-202ENSMUST00000179327 618 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm42710-201ENSMUST00000200608 985 ntBASIC12.23□□□□□ -0.45
Rnf40Q3U319 AC069561.1-201ENSMUST00000213750 424 ntBASIC12.23□□□□□ -0.45
Rnf40Q3U319 AC159886.1-201ENSMUST00000217099 1091 ntBASIC12.23□□□□□ -0.45
Rnf40Q3U319 AC161453.1-201ENSMUST00000226078 884 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Erich3-203ENSMUST00000189969 3460 ntBASIC12.23□□□□□ -0.45
Rnf40Q3U319 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Fsd2-201ENSMUST00000042318 3985 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Arhgap15os-201ENSMUST00000139948 1761 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Rnf40Q3U319 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Rnf40Q3U319 Grip1-216ENSMUST00000154238 2482 ntTSL 5 BASIC12.22□□□□□ -0.45
Rnf40Q3U319 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms