Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Gm29358-202ENSMUST00000187941 3227 ntBASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Pck1-201ENSMUST00000029017 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Htr1f-201ENSMUST00000063076 2509 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col28a1Q2UY11 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Gm5740-201ENSMUST00000211003 1857 ntBASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Gm4760-201ENSMUST00000119663 1030 ntBASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Gm9192-201ENSMUST00000183221 985 ntBASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Gm18893-201ENSMUST00000198416 943 ntBASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Gm44262-201ENSMUST00000204969 372 ntBASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 AC166095.1-201ENSMUST00000223731 1241 ntBASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col28a1Q2UY11 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col28a1Q2UY11 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Gm9035-201ENSMUST00000218318 1697 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Gm37737-201ENSMUST00000195013 1638 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Scml2-206ENSMUST00000112345 4847 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Gm26361-201ENSMUST00000158868 186 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Gm28450-201ENSMUST00000187349 638 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 AC161537.1-201ENSMUST00000226199 1015 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms