Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sox9Q04887 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sox9Q04887 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sox9Q04887 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sox9Q04887 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sox9Q04887 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC11.95□□□□□ -0.5
Sox9Q04887 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Sox9Q04887 Gm26616-202ENSMUST00000195676 3107 ntBASIC11.95□□□□□ -0.5
Sox9Q04887 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Sox9Q04887 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Gm8155-201ENSMUST00000216363 1612 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Gm4294-201ENSMUST00000105169 614 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
Sox9Q04887 Gm13624-201ENSMUST00000120263 462 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Gm15549-201ENSMUST00000121595 622 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Ccnb1-ps-201ENSMUST00000155338 1287 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Gm7211-201ENSMUST00000172692 1118 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Ccnb1-207ENSMUST00000174038 1182 ntTSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Mir8093-201ENSMUST00000185043 137 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Gm29135-201ENSMUST00000188411 612 ntTSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Gm37851-201ENSMUST00000193871 889 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Gm43506-201ENSMUST00000200675 753 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Gm45812-201ENSMUST00000212199 192 ntTSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC11.94□□□□□ -0.5
Sox9Q04887 AC159282.1-204ENSMUST00000219472 780 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Cypt12-201ENSMUST00000029080 550 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Sox9Q04887 Krtap2-4-201ENSMUST00000074926 828 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Sox9Q04887 Olfr1313-201ENSMUST00000099599 938 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Sox9Q04887 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Rnf17-202ENSMUST00000223627 2077 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sox9Q04887 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Gm14005-210ENSMUST00000225087 1413 ntBASIC11.94□□□□□ -0.5
Sox9Q04887 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sox9Q04887 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Sox9Q04887 Snx27-208ENSMUST00000200642 1308 ntTSL 5 BASIC11.93□□□□□ -0.5
Sox9Q04887 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC11.93□□□□□ -0.5
Sox9Q04887 Gm12389-201ENSMUST00000117696 418 ntBASIC11.93□□□□□ -0.5
Sox9Q04887 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC11.93□□□□□ -0.5
Sox9Q04887 Hoxd3os1-203ENSMUST00000145799 511 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Gm16537-201ENSMUST00000161529 702 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Mid1-ps1-201ENSMUST00000167967 1248 ntBASIC11.93□□□□□ -0.5
Sox9Q04887 Tex33-203ENSMUST00000169575 942 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Sox9Q04887 Mir7035-201ENSMUST00000184713 82 ntBASIC11.93□□□□□ -0.5
Sox9Q04887 Gm37284-201ENSMUST00000193607 539 ntBASIC11.93□□□□□ -0.5
Sox9Q04887 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC11.93□□□□□ -0.5
Sox9Q04887 Ebi3-201ENSMUST00000003274 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Sox9Q04887 Defa3-201ENSMUST00000098893 410 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Gm6478-201ENSMUST00000099450 742 ntBASIC11.93□□□□□ -0.5
Sox9Q04887 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC11.93□□□□□ -0.5
Sox9Q04887 Gm1840-201ENSMUST00000051687 1432 ntBASIC11.93□□□□□ -0.5
Sox9Q04887 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sox9Q04887 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
Sox9Q04887 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Sox9Q04887 Gm37600-201ENSMUST00000193764 3292 ntBASIC11.92□□□□□ -0.5
Sox9Q04887 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox9Q04887 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
Sox9Q04887 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms