Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Shmt1P50431 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Gm39204-201ENSMUST00000210045 1307 ntTSL 5 BASIC12.18□□□□□ -0.46
Shmt1P50431 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Shmt1P50431 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
Shmt1P50431 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Gm11246-201ENSMUST00000120880 345 ntBASIC12.18□□□□□ -0.46
Shmt1P50431 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC12.18□□□□□ -0.46
Shmt1P50431 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Gm5778-201ENSMUST00000171003 1072 ntBASIC12.18□□□□□ -0.46
Shmt1P50431 Gm7741-201ENSMUST00000181445 989 ntBASIC12.18□□□□□ -0.46
Shmt1P50431 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC12.18□□□□□ -0.46
Shmt1P50431 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Gm6722-201ENSMUST00000221586 390 ntBASIC12.18□□□□□ -0.46
Shmt1P50431 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC12.18□□□□□ -0.46
Shmt1P50431 AC122350.1-201ENSMUST00000228135 533 ntBASIC12.18□□□□□ -0.46
Shmt1P50431 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Shmt1P50431 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Shmt1P50431 Gm5879-201ENSMUST00000089501 1209 ntBASIC12.18□□□□□ -0.46
Shmt1P50431 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Shmt1P50431 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.18□□□□□ -0.46
Shmt1P50431 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.18□□□□□ -0.46
Shmt1P50431 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.18□□□□□ -0.46
Shmt1P50431 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Gm25148-201ENSMUST00000104611 123 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Shmt1P50431 Gm15615-201ENSMUST00000118876 198 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.17□□□□□ -0.46
Shmt1P50431 Gm5542-201ENSMUST00000195485 1089 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 Gm45219-201ENSMUST00000205602 465 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 CT485606.1-201ENSMUST00000213187 878 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 CT485607.1-201ENSMUST00000216100 85 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 Gm10752-201ENSMUST00000218348 729 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC12.17□□□□□ -0.46
Shmt1P50431 AC115122.1-201ENSMUST00000224850 1040 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 Gm6430-201ENSMUST00000054664 1248 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Shmt1P50431 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Shmt1P50431 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Shmt1P50431 Gm5740-201ENSMUST00000211003 1857 ntBASIC12.17□□□□□ -0.46
Shmt1P50431 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Shmt1P50431 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Shmt1P50431 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Shmt1P50431 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
Shmt1P50431 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms