Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Gm8199-201ENSMUST00000121323 823 ntBASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Gm6905-201ENSMUST00000205729 511 ntBASIC12.56□□□□□ -0.4
Chmp6P0C0A3 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Gm9129-201ENSMUST00000218173 1689 ntBASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Chmp6P0C0A3 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Gm15991-202ENSMUST00000212123 3565 ntBASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 BC043934-202ENSMUST00000185694 2356 ntBASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Manea-201ENSMUST00000041374 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Gm7851-201ENSMUST00000117574 323 ntBASIC12.55□□□□□ -0.4
Chmp6P0C0A3 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Gm9192-201ENSMUST00000183221 985 ntBASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Gm18753-201ENSMUST00000201000 566 ntBASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Spcs1-203ENSMUST00000226374 592 ntBASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Ntng1-201ENSMUST00000051253 327 ntBASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Gm42463-201ENSMUST00000198041 4886 ntBASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Fnbp1l-201ENSMUST00000162409 5198 ntTSL 5 BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Chmp6P0C0A3 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Chmp6P0C0A3 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms