Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm43334-201ENSMUST00000197740 1318 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm25053-201ENSMUST00000103982 133 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm25922-201ENSMUST00000104281 130 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm15617-201ENSMUST00000118973 771 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm13284-201ENSMUST00000121020 547 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm11980-201ENSMUST00000121445 986 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm24679-201ENSMUST00000158762 111 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm16030-201ENSMUST00000159098 603 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm26982-201ENSMUST00000182250 1151 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm28833-201ENSMUST00000189671 559 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm43692-201ENSMUST00000198236 1062 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm25053-202ENSMUST00000199731 132 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm43671-201ENSMUST00000200422 433 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm7959-201ENSMUST00000221823 1078 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Mir483-201ENSMUST00000093631 73 ntBASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Usp40Q8BWR4 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 1700036A12Rik-202ENSMUST00000190053 1828 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Gm9133-201ENSMUST00000118289 540 ntBASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Gm14497-201ENSMUST00000119537 580 ntBASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Gm43966-201ENSMUST00000203301 612 ntBASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Gm7525-201ENSMUST00000219425 454 ntBASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Vmn1r220-201ENSMUST00000072385 897 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Usp40Q8BWR4 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC15.75■□□□□ 0.11
Usp40Q8BWR4 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Gm9544-201ENSMUST00000223349 2482 ntBASIC15.74■□□□□ 0.11
Usp40Q8BWR4 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Gm11560-201ENSMUST00000117567 948 ntBASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Gm12969-201ENSMUST00000120199 1004 ntBASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Gm43912-201ENSMUST00000204352 538 ntBASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 AC122035.1-201ENSMUST00000227576 1016 ntBASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Gm25201-201ENSMUST00000083093 170 ntBASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Usp40Q8BWR4 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 103.9 ms