Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12380-201ENSMUST00000119012 544 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm14247-201ENSMUST00000120950 237 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm23699-201ENSMUST00000158835 135 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm5732-201ENSMUST00000182596 1007 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm21868-201ENSMUST00000185623 1230 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm9230-201ENSMUST00000188228 532 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm20803-202ENSMUST00000190968 1230 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm37592-201ENSMUST00000192741 373 ntTSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm43002-201ENSMUST00000200310 155 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm45118-201ENSMUST00000208928 825 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Colec12-201ENSMUST00000040069 3322 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm43522-201ENSMUST00000196697 1922 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 1700019D03Rik-202ENSMUST00000114492 3565 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm14644-201ENSMUST00000116671 647 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm15711-201ENSMUST00000118889 535 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm8546-201ENSMUST00000178288 1264 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm5706-201ENSMUST00000181525 993 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm28719-201ENSMUST00000187779 1757 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm45206-201ENSMUST00000206885 2285 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm18782-201ENSMUST00000209023 1399 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Gm29787-201ENSMUST00000222129 849 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Spcs1-203ENSMUST00000226374 592 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 AC154671.1-201ENSMUST00000228617 1578 ntBASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Sh3rf1Q69ZI1 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Sh3rf1Q69ZI1 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 66.8 ms