Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC12.74□□□□□ -0.37
Ift88Q61371 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Ift88Q61371 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Dab2-211ENSMUST00000161812 2710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC12.74□□□□□ -0.37
Ift88Q61371 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC12.74□□□□□ -0.37
Ift88Q61371 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ift88Q61371 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Ift88Q61371 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 CT010447.1-201ENSMUST00000225657 1608 ntBASIC12.73□□□□□ -0.37
Ift88Q61371 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC12.73□□□□□ -0.37
Ift88Q61371 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Ift88Q61371 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC12.73□□□□□ -0.37
Ift88Q61371 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC12.73□□□□□ -0.37
Ift88Q61371 Gm7895-201ENSMUST00000187459 1173 ntBASIC12.73□□□□□ -0.37
Ift88Q61371 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.73□□□□□ -0.37
Ift88Q61371 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Gm45224-201ENSMUST00000208203 414 ntBASIC12.73□□□□□ -0.37
Ift88Q61371 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC12.73□□□□□ -0.37
Ift88Q61371 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.73□□□□□ -0.37
Ift88Q61371 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC12.73□□□□□ -0.37
Ift88Q61371 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Ift88Q61371 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Ift88Q61371 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ift88Q61371 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC12.73□□□□□ -0.37
Ift88Q61371 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC12.73□□□□□ -0.37
Ift88Q61371 Gm38089-201ENSMUST00000193585 1514 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Gm43908-201ENSMUST00000205074 1472 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 Gm9466-201ENSMUST00000218144 2246 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
Ift88Q61371 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 Gm8856-201ENSMUST00000185254 1144 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Ift88Q61371 Gm44415-201ENSMUST00000204151 2112 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Ift88Q61371 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Ift88Q61371 Gm9035-201ENSMUST00000218318 1697 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 Rxfp2-206ENSMUST00000201612 2470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.72□□□□□ -0.37
Ift88Q61371 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Ift88Q61371 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC12.72□□□□□ -0.37
Ift88Q61371 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 74.5 ms