Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm5982-201ENSMUST00000196234 512 ntBASIC13.6□□□□□ -0.23
Limch1Q3UH68 Gm45219-201ENSMUST00000205602 465 ntBASIC13.6□□□□□ -0.23
Limch1Q3UH68 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Gm18065-201ENSMUST00000221395 526 ntBASIC13.6□□□□□ -0.23
Limch1Q3UH68 AC134869.4-202ENSMUST00000224350 837 ntBASIC13.6□□□□□ -0.23
Limch1Q3UH68 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Gm1840-201ENSMUST00000051687 1432 ntBASIC13.6□□□□□ -0.23
Limch1Q3UH68 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Limch1Q3UH68 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Gm9072-201ENSMUST00000218390 1514 ntBASIC13.59□□□□□ -0.23
Limch1Q3UH68 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Gm14460-201ENSMUST00000121511 639 ntBASIC13.59□□□□□ -0.23
Limch1Q3UH68 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Mir8093-201ENSMUST00000185043 137 ntBASIC13.59□□□□□ -0.23
Limch1Q3UH68 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 AC165351.1-201ENSMUST00000219078 2020 ntBASIC13.59□□□□□ -0.23
Limch1Q3UH68 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Gm45677-201ENSMUST00000209975 1341 ntBASIC13.59□□□□□ -0.23
Limch1Q3UH68 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Gm37105-201ENSMUST00000192251 2085 ntBASIC13.59□□□□□ -0.23
Limch1Q3UH68 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC13.59□□□□□ -0.23
Limch1Q3UH68 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC13.58□□□□□ -0.23
Limch1Q3UH68 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Limch1Q3UH68 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Gm11628-201ENSMUST00000117568 171 ntBASIC13.58□□□□□ -0.24
Limch1Q3UH68 Gm15881-201ENSMUST00000148792 942 ntBASIC13.58□□□□□ -0.24
Limch1Q3UH68 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Gm10774-201ENSMUST00000188689 204 ntBASIC13.58□□□□□ -0.24
Limch1Q3UH68 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Gm38228-201ENSMUST00000193169 1293 ntBASIC13.58□□□□□ -0.24
Limch1Q3UH68 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Gm2965-201ENSMUST00000198365 343 ntBASIC13.58□□□□□ -0.24
Limch1Q3UH68 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC13.58□□□□□ -0.24
Limch1Q3UH68 AC113082.1-201ENSMUST00000217324 327 ntBASIC13.58□□□□□ -0.24
Limch1Q3UH68 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC13.58□□□□□ -0.24
Limch1Q3UH68 AC140293.1-201ENSMUST00000225626 1247 ntBASIC13.58□□□□□ -0.24
Limch1Q3UH68 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Gm10254-201ENSMUST00000052888 867 ntBASIC13.58□□□□□ -0.24
Limch1Q3UH68 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Limch1Q3UH68 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms