Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Mir6973a-201ENSMUST00000183646 78 ntBASIC9.91□□□□□ -0.82
Col8a1Q00780 1810026B05Rik-208ENSMUST00000190028 590 ntTSL 3 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Gm6423-201ENSMUST00000204315 934 ntBASIC9.91□□□□□ -0.82
Col8a1Q00780 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Gm30671-201ENSMUST00000214898 318 ntBASIC9.91□□□□□ -0.82
Col8a1Q00780 AC138716.2-201ENSMUST00000226670 1016 ntBASIC9.91□□□□□ -0.82
Col8a1Q00780 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Gm4900-201ENSMUST00000222046 1628 ntBASIC9.91□□□□□ -0.82
Col8a1Q00780 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 Dopey2-207ENSMUST00000227156 7340 ntBASIC9.91□□□□□ -0.82
Col8a1Q00780 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Gm37513-201ENSMUST00000194830 2268 ntBASIC9.91□□□□□ -0.82
Col8a1Q00780 Gm38378-201ENSMUST00000195153 2268 ntBASIC9.91□□□□□ -0.82
Col8a1Q00780 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC9.91□□□□□ -0.82
Col8a1Q00780 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC9.91□□□□□ -0.82
Col8a1Q00780 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Gm17213-201ENSMUST00000165161 1360 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Gm38376-201ENSMUST00000195493 2253 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 AC126262.1-201ENSMUST00000221802 1904 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Mir744-201ENSMUST00000103261 100 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Gm11957-201ENSMUST00000118304 779 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Gm14247-201ENSMUST00000120950 237 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Gm14993-201ENSMUST00000121180 164 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Gm16538-201ENSMUST00000162407 442 ntTSL 2 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Gm38151-201ENSMUST00000195085 289 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Gm45113-201ENSMUST00000207518 165 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
Col8a1Q00780 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 AC130823.1-201ENSMUST00000228929 1549 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Gm43807-201ENSMUST00000200678 1781 ntBASIC9.9□□□□□ -0.82
Col8a1Q00780 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
Col8a1Q00780 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
Col8a1Q00780 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.83
Col8a1Q00780 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Col8a1Q00780 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Col8a1Q00780 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC9.9□□□□□ -0.83
Col8a1Q00780 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
Col8a1Q00780 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
Col8a1Q00780 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
Col8a1Q00780 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.83
Col8a1Q00780 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
Col8a1Q00780 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC9.89□□□□□ -0.83
Col8a1Q00780 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Col8a1Q00780 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Col8a1Q00780 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Col8a1Q00780 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Col8a1Q00780 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
Col8a1Q00780 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
Col8a1Q00780 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC9.89□□□□□ -0.83
Col8a1Q00780 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.83
Col8a1Q00780 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.83
Col8a1Q00780 Gm21759-201ENSMUST00000178345 1828 ntBASIC9.89□□□□□ -0.83
Col8a1Q00780 Gm37131-201ENSMUST00000192502 1561 ntBASIC9.89□□□□□ -0.83
Col8a1Q00780 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC9.89□□□□□ -0.83
Col8a1Q00780 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Col8a1Q00780 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.83
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms