Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.21□□□□□ -0.46
Shmt1P50431 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Shmt1P50431 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC12.21□□□□□ -0.46
Shmt1P50431 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Shmt1P50431 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
Shmt1P50431 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC12.2□□□□□ -0.46
Shmt1P50431 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Shmt1P50431 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Shmt1P50431 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC12.2□□□□□ -0.46
Shmt1P50431 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Gm15374-201ENSMUST00000119313 844 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 Gm9089-201ENSMUST00000122027 526 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC12.2□□□□□ -0.46
Shmt1P50431 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Gm23771-201ENSMUST00000178702 110 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
Shmt1P50431 Gm43002-201ENSMUST00000200310 155 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 AC153505.1-201ENSMUST00000218819 1071 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 CT573047.1-201ENSMUST00000223652 851 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 AC140293.1-201ENSMUST00000225626 1247 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Shmt1P50431 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC12.2□□□□□ -0.46
Shmt1P50431 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Shmt1P50431 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Shmt1P50431 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Shmt1P50431 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Shmt1P50431 Gm43102-201ENSMUST00000201004 2324 ntBASIC12.2□□□□□ -0.46
Shmt1P50431 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Shmt1P50431 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Shmt1P50431 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Shmt1P50431 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.19□□□□□ -0.46
Shmt1P50431 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Shmt1P50431 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC12.19□□□□□ -0.46
Shmt1P50431 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm23272-201ENSMUST00000104053 129 ntBASIC12.19□□□□□ -0.46
Shmt1P50431 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm6485-201ENSMUST00000160676 439 ntBASIC12.19□□□□□ -0.46
Shmt1P50431 Gm27910-201ENSMUST00000185004 107 ntBASIC12.19□□□□□ -0.46
Shmt1P50431 Gm9645-201ENSMUST00000197131 792 ntBASIC12.19□□□□□ -0.46
Shmt1P50431 Gm44315-201ENSMUST00000203041 219 ntBASIC12.19□□□□□ -0.46
Shmt1P50431 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC12.19□□□□□ -0.46
Shmt1P50431 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Shmt1P50431 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm23105-201ENSMUST00000083719 134 ntBASIC12.19□□□□□ -0.46
Shmt1P50431 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Gm44755-201ENSMUST00000207830 2102 ntBASIC12.19□□□□□ -0.46
Shmt1P50431 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 CT010447.1-201ENSMUST00000225657 1608 ntBASIC12.19□□□□□ -0.46
Shmt1P50431 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Shmt1P50431 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Shmt1P50431 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC12.18□□□□□ -0.46
Shmt1P50431 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC12.18□□□□□ -0.46
Shmt1P50431 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms